257 related articles for article (PubMed ID: 35315560)
1. Disentangle genus microdiversity within a complex microbial community by using a multi-distance long-read binning method: example of Candidatus Accumulibacter.
Adler A; Poirier S; Pagni M; Maillard J; Holliger C
Environ Microbiol; 2022 Apr; 24(4):2136-2156. PubMed ID: 35315560
[TBL] [Abstract][Full Text] [Related]
2. Refinement of the "
Stewart RD; Myers KS; Amstadt C; Seib M; McMahon KD; Noguera DR
mSystems; 2024 Mar; 9(3):e0118823. PubMed ID: 38415636
[TBL] [Abstract][Full Text] [Related]
3. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
4. A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal.
Albertsen M; Hansen LB; Saunders AM; Nielsen PH; Nielsen KL
ISME J; 2012 Jun; 6(6):1094-106. PubMed ID: 22170425
[TBL] [Abstract][Full Text] [Related]
5. MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics.
Churcheward B; Millet M; Bihouée A; Fertin G; Chaffron S
mSystems; 2022 Aug; 7(4):e0043222. PubMed ID: 35703559
[TBL] [Abstract][Full Text] [Related]
6. High-quality bacterial genomes of a partial-nitritation/anammox system by an iterative hybrid assembly method.
Liu L; Wang Y; Che Y; Chen Y; Xia Y; Luo R; Cheng SH; Zheng C; Zhang T
Microbiome; 2020 Nov; 8(1):155. PubMed ID: 33158461
[TBL] [Abstract][Full Text] [Related]
7. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
[TBL] [Abstract][Full Text] [Related]
8. Constructing metagenome-assembled genomes for almost all components in a real bacterial consortium for binning benchmarking.
Wu Z; Wang Y; Zeng J; Zhou Y
BMC Genomics; 2022 Nov; 23(1):746. PubMed ID: 36352370
[TBL] [Abstract][Full Text] [Related]
9. Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy.
Liu L; Wang Y; Yang Y; Wang D; Cheng SH; Zheng C; Zhang T
Microbiome; 2021 Oct; 9(1):205. PubMed ID: 34649602
[TBL] [Abstract][Full Text] [Related]
10. Long-Read Sequencing Improves Recovery of Picoeukaryotic Genomes and Zooplankton Marker Genes from Marine Metagenomes.
Patin NV; Goodwin KD
mSystems; 2022 Dec; 7(6):e0059522. PubMed ID: 36448813
[TBL] [Abstract][Full Text] [Related]
11. Analysis of the fine-scale population structure of "Candidatus accumulibacter phosphatis" in enhanced biological phosphorus removal sludge, using fluorescence in situ hybridization and flow cytometric sorting.
Kim JM; Lee HJ; Kim SY; Song JJ; Park W; Jeon CO
Appl Environ Microbiol; 2010 Jun; 76(12):3825-35. PubMed ID: 20418432
[TBL] [Abstract][Full Text] [Related]
12. Long-Read Metagenome-Assembled Genomes Improve Identification of Novel Complete Biosynthetic Gene Clusters in a Complex Microbial Activated Sludge Ecosystem.
Sánchez-Navarro R; Nuhamunada M; Mohite OS; Wasmund K; Albertsen M; Gram L; Nielsen PH; Weber T; Singleton CM
mSystems; 2022 Dec; 7(6):e0063222. PubMed ID: 36445112
[TBL] [Abstract][Full Text] [Related]
13. Long-Read-Resolved, Ecosystem-Wide Exploration of Nucleotide and Structural Microdiversity of Lake Bacterioplankton Genomes.
Okazaki Y; Nakano SI; Toyoda A; Tamaki H
mSystems; 2022 Aug; 7(4):e0043322. PubMed ID: 35938717
[TBL] [Abstract][Full Text] [Related]
14. Metagenome-assembled genome binning methods with short reads disproportionately fail for plasmids and genomic Islands.
Maguire F; Jia B; Gray KL; Lau WYV; Beiko RG; Brinkman FSL
Microb Genom; 2020 Oct; 6(10):. PubMed ID: 33001022
[TBL] [Abstract][Full Text] [Related]
15. Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies.
Feng X; Li H
Genome Biol; 2024 Apr; 25(1):92. PubMed ID: 38605401
[TBL] [Abstract][Full Text] [Related]
16. From metagenomes to metabolism: Systematically assessing the metabolic flux feasibilities for "Candidatus Accumulibacter" species during anaerobic substrate uptake.
Páez-Watson T; van Loosdrecht MCM; Wahl SA
Water Res; 2024 Feb; 250():121028. PubMed ID: 38128304
[TBL] [Abstract][Full Text] [Related]
17. Recovery of complete genomes and non-chromosomal replicons from activated sludge enrichment microbial communities with long read metagenome sequencing.
Arumugam K; Bessarab I; Haryono MAS; Liu X; Zuniga-Montanez RE; Roy S; Qiu G; Drautz-Moses DI; Law YY; Wuertz S; Lauro FM; Huson DH; Williams RBH
NPJ Biofilms Microbiomes; 2021 Mar; 7(1):23. PubMed ID: 33727564
[TBL] [Abstract][Full Text] [Related]
18. HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps.
Du Y; Sun F
Genome Biol; 2022 Feb; 23(1):63. PubMed ID: 35227283
[TBL] [Abstract][Full Text] [Related]
19. binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.
Hickl O; Queirós P; Wilmes P; May P; Heintz-Buschart A
Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36239393
[TBL] [Abstract][Full Text] [Related]
20. The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample.
Meziti A; Rodriguez-R LM; Hatt JK; Peña-Gonzalez A; Levy K; Konstantinidis KT
Appl Environ Microbiol; 2021 Feb; 87(6):. PubMed ID: 33452027
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
