These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
62. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing]. Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702 [TBL] [Abstract][Full Text] [Related]
63. Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo). Matteau D; Rodrigue S Methods Mol Biol; 2015; 1334():173-93. PubMed ID: 26404150 [TBL] [Abstract][Full Text] [Related]
68. CHIPIN: ChIP-seq inter-sample normalization based on signal invariance across transcriptionally constant genes. Polit L; Kerdivel G; Gregoricchio S; Esposito M; Guillouf C; Boeva V BMC Bioinformatics; 2021 Aug; 22(1):407. PubMed ID: 34404353 [TBL] [Abstract][Full Text] [Related]
69. ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus. Johnston D; Kim J; Taylor JF; Earley B; McCabe MS; Lemon K; Duffy C; McMenamy M; Cosby SL; Waters SM BMC Genomics; 2021 Jan; 22(1):14. PubMed ID: 33407093 [TBL] [Abstract][Full Text] [Related]
70. Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data. Qin Q; Fan J; Zheng R; Wan C; Mei S; Wu Q; Sun H; Brown M; Zhang J; Meyer CA; Liu XS Genome Biol; 2020 Feb; 21(1):32. PubMed ID: 32033573 [TBL] [Abstract][Full Text] [Related]
71. Dynamic Evolution of Repetitive Elements and Chromatin States in Panyushev N; Selitskiy M; Melnichenko V; Lebedev E; Okorokova L; Adonin L Genes (Basel); 2024 Jan; 15(1):. PubMed ID: 38254978 [TBL] [Abstract][Full Text] [Related]
72. Integration of ATAC-seq and RNA-seq Unravels Chromatin Accessibility during Sex Reversal in Orange-Spotted Grouper ( Wu X; Yang Y; Zhong C; Guo Y; Wei T; Li S; Lin H; Liu X Int J Mol Sci; 2020 Apr; 21(8):. PubMed ID: 32316525 [TBL] [Abstract][Full Text] [Related]
73. Recapitulation of patient-specific 3D chromatin conformation using machine learning. Xu D; Forbes AN; Cohen S; Palladino A; Karadimitriou T; Khurana E Cell Rep Methods; 2023 Sep; 3(9):100578. PubMed ID: 37673071 [TBL] [Abstract][Full Text] [Related]
74. Chromatin structure predicts survival in glioma patients. Garrett MC; Albano R; Carnwath T; Shah S; Woo D; Lamba M; Plas DR; Paranjpe A; Roskin K; Zhao C; Lu R Sci Rep; 2022 May; 12(1):8221. PubMed ID: 35581287 [TBL] [Abstract][Full Text] [Related]
75. An ATAC-seq atlas of chromatin accessibility in mouse tissues. Liu C; Wang M; Wei X; Wu L; Xu J; Dai X; Xia J; Cheng M; Yuan Y; Zhang P; Li J; Feng T; Chen A; Zhang W; Chen F; Shang Z; Zhang X; Peters BA; Liu L Sci Data; 2019 May; 6(1):65. PubMed ID: 31110271 [TBL] [Abstract][Full Text] [Related]
76. Genomic Features of Open Chromatin Regions (OCRs) in Wild Soybean and Their Effects on Gene Expressions. Huang MK; Zhang L; Zhou LM; Yung WS; Li MW; Lam HM Genes (Basel); 2021 Apr; 12(5):. PubMed ID: 33923056 [TBL] [Abstract][Full Text] [Related]
77. abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis. Ali O; Farooq A; Yang M; Jin VX; Bjørås M; Wang J BMC Bioinformatics; 2022 Mar; 23(1):83. PubMed ID: 35240993 [TBL] [Abstract][Full Text] [Related]
78. Comparison of differential accessibility analysis strategies for ATAC-seq data. Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878 [TBL] [Abstract][Full Text] [Related]
79. Detect accessible chromatin using ATAC-sequencing, from principle to applications. Sun Y; Miao N; Sun T Hereditas; 2019; 156():29. PubMed ID: 31427911 [TBL] [Abstract][Full Text] [Related]
80. DeNOPA: decoding nucleosome positions sensitively with sparse ATAC-seq data. Xu B; Li X; Gao X; Jia Y; Liu J; Li F; Zhang Z Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34875002 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]