These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

163 related articles for article (PubMed ID: 35320278)

  • 1. HiCuT: An efficient and low input method to identify protein-directed chromatin interactions.
    Sati S; Jones P; Kim HS; Zhou LA; Rapp-Reyes E; Leung TH
    PLoS Genet; 2022 Mar; 18(3):e1010121. PubMed ID: 35320278
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
    Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y
    Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Analysis of HiChIP Data.
    Dori M; Forcato M
    Methods Mol Biol; 2022; 2301():209-234. PubMed ID: 34415538
    [TBL] [Abstract][Full Text] [Related]  

  • 4. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
    Ibn-Salem J; Andrade-Navarro MA
    BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
    [TBL] [Abstract][Full Text] [Related]  

  • 5. HiChIP: efficient and sensitive analysis of protein-directed genome architecture.
    Mumbach MR; Rubin AJ; Flynn RA; Dai C; Khavari PA; Greenleaf WJ; Chang HY
    Nat Methods; 2016 Nov; 13(11):919-922. PubMed ID: 27643841
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A systematic evaluation of Hi-C data enhancement methods for enhancing PLAC-seq and HiChIP data.
    Huang L; Yang Y; Li G; Jiang M; Wen J; Abnousi A; Rosen JD; Hu M; Li Y
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35488276
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops.
    Tang L; Liao J; Hill MC; Hu J; Zhao Y; Ellinor PT; Li M
    Nucleic Acids Res; 2024 Mar; 52(5):e25. PubMed ID: 38281134
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Assessing Specific Networks of Chromatin Interactions with HiChIP.
    Di Giammartino DC; Polyzos A; Apostolou E
    Methods Mol Biol; 2022; 2532():113-141. PubMed ID: 35867248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Hi-Tag: a simple and efficient method for identifying protein-mediated long-range chromatin interactions with low cell numbers.
    Qi X; Zhang L; Zhao Q; Zhou P; Zhang S; Li J; Zheng Z; Xiang Y; Dai X; Jin Z; Jian Y; Li X; Fu L; Zhao S
    Sci China Life Sci; 2024 May; 67(5):1027-1034. PubMed ID: 38280143
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq).
    Yu M; Juric I; Abnousi A; Hu M; Ren B
    Methods Mol Biol; 2021; 2351():181-199. PubMed ID: 34382190
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CUT&Tag for efficient epigenomic profiling of small samples and single cells.
    Kaya-Okur HS; Wu SJ; Codomo CA; Pledger ES; Bryson TD; Henikoff JG; Ahmad K; Henikoff S
    Nat Commun; 2019 Apr; 10(1):1930. PubMed ID: 31036827
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
    Buisine N; Ruan X; Ruan Y; Sachs LM
    Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MOWChIP-seq for low-input and multiplexed profiling of genome-wide histone modifications.
    Zhu B; Hsieh YP; Murphy TW; Zhang Q; Naler LB; Lu C
    Nat Protoc; 2019 Dec; 14(12):3366-3394. PubMed ID: 31666743
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A High-Throughput Chromatin Immunoprecipitation Sequencing Approach to Study the Role of MYC on the Epigenetic Landscape.
    Fagnocchi L; Zippo A
    Methods Mol Biol; 2021; 2318():187-208. PubMed ID: 34019291
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bacon: a comprehensive computational benchmarking framework for evaluating targeted chromatin conformation capture-specific methodologies.
    Tang L; Hill MC; Ellinor PT; Li M
    Genome Biol; 2022 Jan; 23(1):30. PubMed ID: 35063001
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identification of significant chromatin contacts from HiChIP data by FitHiChIP.
    Bhattacharyya S; Chandra V; Vijayanand P; Ay F
    Nat Commun; 2019 Sep; 10(1):4221. PubMed ID: 31530818
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CoBATCH for High-Throughput Single-Cell Epigenomic Profiling.
    Wang Q; Xiong H; Ai S; Yu X; Liu Y; Zhang J; He A
    Mol Cell; 2019 Oct; 76(1):206-216.e7. PubMed ID: 31471188
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Chromatin Immunoprecipitation to Study The Plant Epigenome.
    Xie Z; Presting G
    Methods Mol Biol; 2016; 1429():189-96. PubMed ID: 27511176
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
    Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M
    PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Protocol to capture transcription factor-mediated 3D chromatin interactions using affinity tag-based BL-HiChIP.
    Ren R; Hua Y; Wang H
    STAR Protoc; 2023 Dec; 4(4):102589. PubMed ID: 37738118
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.