These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

148 related articles for article (PubMed ID: 35346022)

  • 21. DIscBIO: A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics.
    Ghannoum S; Leoncio Netto W; Fantini D; Ragan-Kelley B; Parizadeh A; Jonasson E; Ståhlberg A; Farhan H; Köhn-Luque A
    Int J Mol Sci; 2021 Jan; 22(3):. PubMed ID: 33573289
    [TBL] [Abstract][Full Text] [Related]  

  • 22. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data.
    Ye C; Zhou Q; Wu X; Yu C; Ji G; Saban DR; Li QQ
    Bioinformatics; 2020 Feb; 36(4):1262-1264. PubMed ID: 31557285
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.
    Slovin S; Carissimo A; Panariello F; Grimaldi A; Bouché V; Gambardella G; Cacchiarelli D
    Methods Mol Biol; 2021; 2284():343-365. PubMed ID: 33835452
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A Bioinformatic Toolkit for Single-Cell mRNA Analysis.
    Baßler K; Günther P; Schulte-Schrepping J; Becker M; Biernat P
    Methods Mol Biol; 2019; 1979():433-455. PubMed ID: 31028653
    [TBL] [Abstract][Full Text] [Related]  

  • 25. genipe: an automated genome-wide imputation pipeline with automatic reporting and statistical tools.
    Lemieux Perreault LP; Legault MA; Asselin G; Dubé MP
    Bioinformatics; 2016 Dec; 32(23):3661-3663. PubMed ID: 27497439
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Molgenis-impute: imputation pipeline in a box.
    Kanterakis A; Deelen P; van Dijk F; Byelas H; Dijkstra M; Swertz MA
    BMC Res Notes; 2015 Aug; 8():359. PubMed ID: 26286716
    [TBL] [Abstract][Full Text] [Related]  

  • 27. ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data.
    Gardeux V; David FPA; Shajkofci A; Schwalie PC; Deplancke B
    Bioinformatics; 2017 Oct; 33(19):3123-3125. PubMed ID: 28541377
    [TBL] [Abstract][Full Text] [Related]  

  • 28. scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data.
    Choi JH; In Kim H; Woo HG
    BMC Bioinformatics; 2020 Aug; 21(1):342. PubMed ID: 32753029
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Flexiplex: a versatile demultiplexer and search tool for omics data.
    Cheng O; Ling MH; Wang C; Wu S; Ritchie ME; Göke J; Amin N; Davidson NM
    Bioinformatics; 2024 Mar; 40(3):. PubMed ID: 38379414
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Kraken: a set of tools for quality control and analysis of high-throughput sequence data.
    Davis MP; van Dongen S; Abreu-Goodger C; Bartonicek N; Enright AJ
    Methods; 2013 Sep; 63(1):41-9. PubMed ID: 23816787
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis.
    Guo M; Wang H; Potter SS; Whitsett JA; Xu Y
    PLoS Comput Biol; 2015 Nov; 11(11):e1004575. PubMed ID: 26600239
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries.
    Solaimanpour S; Sarmiento F; Mrázek J
    PLoS One; 2015; 10(5):e0126070. PubMed ID: 25938432
    [TBL] [Abstract][Full Text] [Related]  

  • 33. BP4RNAseq: a babysitter package for retrospective and newly generated RNA-seq data analyses using both alignment-based and alignment-free quantification method.
    Sun S; Xu L; Zou Q; Wang G
    Bioinformatics; 2021 Jun; 37(9):1319-1321. PubMed ID: 32976573
    [TBL] [Abstract][Full Text] [Related]  

  • 34. BatchQC: interactive software for evaluating sample and batch effects in genomic data.
    Manimaran S; Selby HM; Okrah K; Ruberman C; Leek JT; Quackenbush J; Haibe-Kains B; Bravo HC; Johnson WE
    Bioinformatics; 2016 Dec; 32(24):3836-3838. PubMed ID: 27540268
    [TBL] [Abstract][Full Text] [Related]  

  • 35. NetSeekR: a network analysis pipeline for RNA-Seq time series data.
    Srivastava H; Ferrell D; Popescu GV
    BMC Bioinformatics; 2022 Jan; 23(1):54. PubMed ID: 35090393
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Building and analyzing metacells in single-cell genomics data.
    Bilous M; Hérault L; Gabriel AA; Teleman M; Gfeller D
    Mol Syst Biol; 2024 Jul; 20(7):744-766. PubMed ID: 38811801
    [TBL] [Abstract][Full Text] [Related]  

  • 37. runBNG: a software package for BioNano genomic analysis on the command line.
    Yuan Y; Bayer PE; Lee HT; Edwards D
    Bioinformatics; 2017 Oct; 33(19):3107-3109. PubMed ID: 28605539
    [TBL] [Abstract][Full Text] [Related]  

  • 38. ScSmOP: a universal computational pipeline for single-cell single-molecule multiomics data analysis.
    Jing K; Xu Y; Yang Y; Yin P; Ning D; Huang G; Deng Y; Chen G; Li G; Tian SZ; Zheng M
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37779245
    [TBL] [Abstract][Full Text] [Related]  

  • 39. OMTools: a software package for visualizing and processing optical mapping data.
    Leung AK; Jin N; Yip KY; Chan TF
    Bioinformatics; 2017 Sep; 33(18):2933-2935. PubMed ID: 28505226
    [TBL] [Abstract][Full Text] [Related]  

  • 40. scDAPP: a comprehensive single-cell transcriptomics analysis pipeline optimized for cross-group comparison.
    Ferrena A; Zheng XY; Jackson K; Hoang B; Morrow B; Zheng D
    bioRxiv; 2024 May; ():. PubMed ID: 38766089
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.