These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

97 related articles for article (PubMed ID: 35351609)

  • 1. Guitar2: An improved version of the Guitar for sketching the transcriptomic view of RNA-related biological features.
    Zhang L; Chen S; Chen X; Du X; Liu H
    Methods; 2022 Jul; 203():40-45. PubMed ID: 35351609
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Guitar: An R/Bioconductor Package for Gene Annotation Guided Transcriptomic Analysis of RNA-Related Genomic Features.
    Cui X; Wei Z; Zhang L; Liu H; Sun L; Zhang SW; Huang Y; Meng J
    Biomed Res Int; 2016; 2016():8367534. PubMed ID: 27239475
    [TBL] [Abstract][Full Text] [Related]  

  • 3. spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
    Vitting-Seerup K; Porse BT; Sandelin A; Waage J
    BMC Bioinformatics; 2014 Mar; 15():81. PubMed ID: 24655717
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.
    Meng J; Lu Z; Liu H; Zhang L; Zhang S; Chen Y; Rao MK; Huang Y
    Methods; 2014 Oct; 69(3):274-81. PubMed ID: 24979058
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow.
    Chao KH; Hsiao YW; Lee YF; Lee CY; Lai LC; Tsai MH; Lu TP; Chuang EY
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(5):2023-2031. PubMed ID: 31796413
    [TBL] [Abstract][Full Text] [Related]  

  • 6. easyRNASeq: a bioconductor package for processing RNA-Seq data.
    Delhomme N; Padioleau I; Furlong EE; Steinmetz LM
    Bioinformatics; 2012 Oct; 28(19):2532-3. PubMed ID: 22847932
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.
    Gascoigne DK; Cheetham SW; Cattenoz PB; Clark MB; Amaral PP; Taft RJ; Wilhelm D; Dinger ME; Mattick JS
    Bioinformatics; 2012 Dec; 28(23):3042-50. PubMed ID: 23044541
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Zipper plot: visualizing transcriptional activity of genomic regions.
    Avila Cobos F; Anckaert J; Volders PJ; Everaert C; Rombaut D; Vandesompele J; De Preter K; Mestdagh P
    BMC Bioinformatics; 2017 May; 18(1):231. PubMed ID: 28464823
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The Long Noncoding RNA Transcriptome of
    Rosengarten RD; Santhanam B; Kokosar J; Shaulsky G
    G3 (Bethesda); 2017 Feb; 7(2):387-398. PubMed ID: 27932387
    [No Abstract]   [Full Text] [Related]  

  • 12. CLIPdb: a CLIP-seq database for protein-RNA interactions.
    Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
    BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Divergent transcription is associated with promoters of transcriptional regulators.
    Lepoivre C; Belhocine M; Bergon A; Griffon A; Yammine M; Vanhille L; Zacarias-Cabeza J; Garibal MA; Koch F; Maqbool MA; Fenouil R; Loriod B; Holota H; Gut M; Gut I; Imbert J; Andrau JC; Puthier D; Spicuglia S
    BMC Genomics; 2013 Dec; 14():914. PubMed ID: 24365181
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
    Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
    BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme.
    Li A; Zhang J; Zhou Z
    BMC Bioinformatics; 2014 Sep; 15(1):311. PubMed ID: 25239089
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.
    Hoang TV; Kumar PK; Sutharzan S; Tsonis PA; Liang C; Robinson ML
    Mol Vis; 2014; 20():1491-517. PubMed ID: 25489224
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate transcriptome assembly by Nanopore RNA sequencing reveals novel functional transcripts in hepatocellular carcinoma.
    Fang Y; Chen G; Chen F; Hu E; Dong X; Li Z; He L; Sun Y; Qiu L; Xu H; Cai Z; Liu X
    Cancer Sci; 2021 Sep; 112(9):3555-3568. PubMed ID: 34255396
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.
    Raghavachari N; Barb J; Yang Y; Liu P; Woodhouse K; Levy D; O'Donnell CJ; Munson PJ; Kato GJ
    BMC Med Genomics; 2012 Jun; 5():28. PubMed ID: 22747986
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.