BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 35368055)

  • 1. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
    Chen Z; Gong F; Wan L; Ma L
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
    Yu Z; Li A; Wang M
    BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
    Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
    Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring single-cell copy number profiles through cross-cell segmentation of read counts.
    Liu F; Shi F; Yu Z
    BMC Genomics; 2024 Jan; 25(1):25. PubMed ID: 38166601
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ConDoR: tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    Genome Biol; 2023 Nov; 24(1):272. PubMed ID: 38037115
    [TBL] [Abstract][Full Text] [Related]  

  • 6. rcCAE: a convolutional autoencoder method for detecting intra-tumor heterogeneity and single-cell copy number alterations.
    Yu Z; Liu F; Shi F; Du F
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 36961311
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
    Chen Z; Gong F; Wan L; Ma L
    Bioinformatics; 2020 Jun; 36(11):3299-3306. PubMed ID: 32159762
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Inferring clonal evolution of tumors from single nucleotide somatic mutations.
    Jiao W; Vembu S; Deshwar AG; Stein L; Morris Q
    BMC Bioinformatics; 2014 Feb; 15():35. PubMed ID: 24484323
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ConDoR: Tumor phylogeny inference with a copy-number constrained mutation loss model.
    Sashittal P; Zhang H; Iacobuzio-Donahue CA; Raphael BJ
    bioRxiv; 2023 Jan; ():. PubMed ID: 36711528
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BAMSE: Bayesian model selection for tumor phylogeny inference among multiple samples.
    Toosi H; Moeini A; Hajirasouliha I
    BMC Bioinformatics; 2019 Jun; 20(Suppl 11):282. PubMed ID: 31167637
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SCARLET: Single-cell tumor phylogeny inference with copy-number constrained mutation losses.
    Satas G; Zaccaria S; Mon G; Raphael BJ
    Cell Syst; 2020 Apr; 10(4):323-332.e8. PubMed ID: 32864481
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Cracking the pattern of tumor evolution based on single-cell copy number alterations.
    Wang Y; Zhang M; Shi J; Zhu Y; Wang X; Zhang S; Wang F
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37791583
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.
    Weber LL; Zhang C; Ochoa I; El-Kebir M
    PLoS Comput Biol; 2023 Oct; 19(10):e1011544. PubMed ID: 37819942
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Single-Cell DNA Sequencing Reveals Punctuated and Gradual Clonal Evolution in Hepatocellular Carcinoma.
    Guo L; Yi X; Chen L; Zhang T; Guo H; Chen Z; Cheng J; Cao Q; Liu H; Hou C; Qi L; Zhu Z; Liu Y; Kong R; Zhang C; Zhou X; Zhang Z; Song T; Xue R; Zhang N
    Gastroenterology; 2022 Jan; 162(1):238-252. PubMed ID: 34481846
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SCClone: Accurate Clustering of Tumor Single-Cell DNA Sequencing Data.
    Yu Z; Du F; Song L
    Front Genet; 2022; 13():823941. PubMed ID: 35154282
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CoT: a transformer-based method for inferring tumor clonal copy number substructure from scDNA-seq data.
    Liu F; Shi F; Du F; Cao X; Yu Z
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38670159
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity.
    Montemurro M; Grassi E; Pizzino CG; Bertotti A; Ficarra E; Urgese G
    BMC Bioinformatics; 2021 Jul; 22(1):360. PubMed ID: 34217219
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Bayesian inference for intratumour heterogeneity in mutations and copy number variation.
    Lee J; Müller P; Sengupta S; Gulukota K; Ji Y
    J R Stat Soc Ser C Appl Stat; 2016 Aug; 65(4):547-563. PubMed ID: 28461708
    [TBL] [Abstract][Full Text] [Related]  

  • 19. scGAL: unmask tumor clonal substructure by jointly analyzing independent single-cell copy number and scRNA-seq data.
    Li R; Shi F; Song L; Yu Z
    BMC Genomics; 2024 Apr; 25(1):393. PubMed ID: 38649804
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
    Fu X; Lei H; Tao Y; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.