These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing. Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557 [TBL] [Abstract][Full Text] [Related]
7. A network-based computational framework to predict and differentiate functions for gene isoforms using exon-level expression data. Wang D; Zou X; Fai Au K Methods; 2021 May; 189():54-64. PubMed ID: 32534132 [TBL] [Abstract][Full Text] [Related]
8. From words to complete phrases: insight into single-cell isoforms using short and long reads. Joglekar A; Foord C; Jarroux J; Pollard S; Tilgner HU Transcription; 2023; 14(3-5):92-104. PubMed ID: 37314295 [TBL] [Abstract][Full Text] [Related]
9. IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation. Li HD; Yang C; Zhang Z; Yang M; Wu FX; Omenn GS; Wang J Bioinformatics; 2021 May; 37(4):522-530. PubMed ID: 32966552 [TBL] [Abstract][Full Text] [Related]
11. Functional Networks of Highest-Connected Splice Isoforms: From The Chromosome 17 Human Proteome Project. Li HD; Menon R; Govindarajoo B; Panwar B; Zhang Y; Omenn GS; Guan Y J Proteome Res; 2015 Sep; 14(9):3484-91. PubMed ID: 26216192 [TBL] [Abstract][Full Text] [Related]
12. A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain. Joglekar A; Prjibelski A; Mahfouz A; Collier P; Lin S; Schlusche AK; Marrocco J; Williams SR; Haase B; Hayes A; Chew JG; Weisenfeld NI; Wong MY; Stein AN; Hardwick SA; Hunt T; Wang Q; Dieterich C; Bent Z; Fedrigo O; Sloan SA; Risso D; Jarvis ED; Flicek P; Luo W; Pitt GS; Frankish A; Smit AB; Ross ME; Tilgner HU Nat Commun; 2021 Jan; 12(1):463. PubMed ID: 33469025 [TBL] [Abstract][Full Text] [Related]
13. Characterization of kinase gene expression and splicing profile in prostate cancer with RNA-Seq data. Feng H; Li T; Zhang X BMC Genomics; 2018 Aug; 19(Suppl 6):564. PubMed ID: 30367578 [TBL] [Abstract][Full Text] [Related]
14. SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples. Yalamanchili HK; Li Z; Wang P; Wong MP; Yao J; Wang J Nucleic Acids Res; 2014 Sep; 42(15):e121. PubMed ID: 25034693 [TBL] [Abstract][Full Text] [Related]
15. Identification of Protein Isoforms Using Reference Databases Built from Long and Short Read RNA-Sequencing. Tay AP; Hamey JJ; Martyn GE; Wilson LOW; Wilkins MR J Proteome Res; 2022 Jul; 21(7):1628-1639. PubMed ID: 35612954 [TBL] [Abstract][Full Text] [Related]
16. Single-cell gene and isoform expression analysis reveals signatures of ageing in haematopoietic stem and progenitor cells. Mincarelli L; Uzun V; Wright D; Scoones A; Rushworth SA; Haerty W; Macaulay IC Commun Biol; 2023 May; 6(1):558. PubMed ID: 37225862 [TBL] [Abstract][Full Text] [Related]
17. Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer. Afsari B; Guo T; Considine M; Florea L; Kagohara LT; Stein-O'Brien GL; Kelley D; Flam E; Zambo KD; Ha PK; Geman D; Ochs MF; Califano JA; Gaykalova DA; Favorov AV; Fertig EJ Bioinformatics; 2018 Jun; 34(11):1859-1867. PubMed ID: 29342249 [TBL] [Abstract][Full Text] [Related]
18. SAPFIR: A webserver for the identification of alternative protein features. Zhou D; Tran Y; Abou Elela S; Scott MS BMC Bioinformatics; 2022 Jun; 23(1):250. PubMed ID: 35751026 [TBL] [Abstract][Full Text] [Related]
19. Robust stratification of breast cancer subtypes using differential patterns of transcript isoform expression. Stricker TP; Brown CD; Bandlamudi C; McNerney M; Kittler R; Montoya V; Peterson A; Grossman R; White KP PLoS Genet; 2017 Mar; 13(3):e1006589. PubMed ID: 28263985 [TBL] [Abstract][Full Text] [Related]
20. High-Resolution Expression Map of the Arabidopsis Root Reveals Alternative Splicing and lincRNA Regulation. Li S; Yamada M; Han X; Ohler U; Benfey PN Dev Cell; 2016 Nov; 39(4):508-522. PubMed ID: 27840108 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]