These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

250 related articles for article (PubMed ID: 35392802)

  • 41. CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis.
    Oliveira de Biagi CA; Nociti RP; Brotto DB; Funicheli BO; Cássia Ruy P; Bianchi Ximenez JP; Alves Figueiredo DL; Araújo Silva W
    BMC Genomics; 2021 Aug; 22(1):624. PubMed ID: 34416858
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules.
    Yang G; Ma A; Qin ZS; Chen L
    Bioinformatics; 2020 Apr; 36(8):2352-2358. PubMed ID: 31899481
    [TBL] [Abstract][Full Text] [Related]  

  • 43. DChIPRep, an R/Bioconductor package for differential enrichment analysis in chromatin studies.
    Chabbert CD; Steinmetz LM; Klaus B
    PeerJ; 2016; 4():e1981. PubMed ID: 27168989
    [TBL] [Abstract][Full Text] [Related]  

  • 44. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 45. fcScan: a versatile tool to cluster combinations of sites using genomic coordinates.
    El-Kurdi A; Khalil GA; Khazen G; Khoueiry P
    BMC Bioinformatics; 2020 May; 21(1):194. PubMed ID: 32429868
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Cogito: automated and generic comparison of annotated genomic intervals.
    Bürger A; Dugas M
    BMC Bioinformatics; 2022 Aug; 23(1):315. PubMed ID: 35927614
    [TBL] [Abstract][Full Text] [Related]  

  • 47. MoleculeExperiment enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor.
    Peters Couto BZ; Robertson N; Patrick E; Ghazanfar S
    Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37698995
    [TBL] [Abstract][Full Text] [Related]  

  • 48. LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.
    Seyres D; Darbo E; Perrin L; Herrmann C; González A
    Bioinformatics; 2016 Apr; 32(7):1091-3. PubMed ID: 26628586
    [TBL] [Abstract][Full Text] [Related]  

  • 49. An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.
    Cheng CY; Chu CH; Hsu HW; Hsu FR; Tang CY; Wang WC; Kung HJ; Chang PC
    BMC Genomics; 2014; 15 Suppl 1(Suppl 1):S1. PubMed ID: 24564277
    [TBL] [Abstract][Full Text] [Related]  

  • 50. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
    Gu Z; Eils R; Schlesner M
    Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
    [TBL] [Abstract][Full Text] [Related]  

  • 51. StructuralVariantAnnotation: a R/Bioconductor foundation for a caller-agnostic structural variant software ecosystem.
    Cameron DL; Dong R; Papenfuss AT
    Bioinformatics; 2022 Mar; 38(7):2046-2048. PubMed ID: 35134827
    [TBL] [Abstract][Full Text] [Related]  

  • 52. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
    Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
    [TBL] [Abstract][Full Text] [Related]  

  • 53. Integrating ATAC-seq and RNA-seq Reveals the Dynamics of Chromatin Accessibility and Gene Expression in Apple Response to Drought.
    Wang S; He J; Deng M; Wang C; Wang R; Yan J; Luo M; Ma F; Guan Q; Xu J
    Int J Mol Sci; 2022 Sep; 23(19):. PubMed ID: 36232500
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data.
    Qin Q; Fan J; Zheng R; Wan C; Mei S; Wu Q; Sun H; Brown M; Zhang J; Meyer CA; Liu XS
    Genome Biol; 2020 Feb; 21(1):32. PubMed ID: 32033573
    [TBL] [Abstract][Full Text] [Related]  

  • 55. pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.
    Marini F; Binder H
    BMC Bioinformatics; 2019 Jun; 20(1):331. PubMed ID: 31195976
    [TBL] [Abstract][Full Text] [Related]  

  • 56. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
    Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
    BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
    [TBL] [Abstract][Full Text] [Related]  

  • 57. hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets.
    Zhang Q; Liu W; Zhang HM; Xie GY; Miao YR; Xia M; Guo AY
    Genomics Proteomics Bioinformatics; 2020 Apr; 18(2):120-128. PubMed ID: 32858223
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Bibliometric review of ATAC-Seq and its application in gene expression.
    Luo L; Gribskov M; Wang S
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35255493
    [TBL] [Abstract][Full Text] [Related]  

  • 59. PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data.
    Woo S; Zhang X; Sauteraud R; Robert F; Gottardo R
    Bioinformatics; 2013 Aug; 29(16):2049-50. PubMed ID: 23786769
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 13.