BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

166 related articles for article (PubMed ID: 35396535)

  • 1. Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas.
    Ng AWT; Contino G; Killcoyne S; Devonshire G; Hsu R; Abbas S; Su J; Redmond AM; Weaver JMJ; Eldridge MD; Tavaré S; ; Edwards PAW; Fitzgerald RC
    Commun Biol; 2022 Apr; 5(1):335. PubMed ID: 35396535
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Mobile element insertions are frequent in oesophageal adenocarcinomas and can mislead paired-end sequencing analysis.
    Paterson AL; Weaver JM; Eldridge MD; Tavaré S; Fitzgerald RC; Edwards PA;
    BMC Genomics; 2015 Jul; 16(1):473. PubMed ID: 26159513
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma.
    Cheng C; Zhou Y; Li H; Xiong T; Li S; Bi Y; Kong P; Wang F; Cui H; Li Y; Fang X; Yan T; Li Y; Wang J; Yang B; Zhang L; Jia Z; Song B; Hu X; Yang J; Qiu H; Zhang G; Liu J; Xu E; Shi R; Zhang Y; Liu H; He C; Zhao Z; Qian Y; Rong R; Han Z; Zhang Y; Luo W; Wang J; Peng S; Yang X; Li X; Li L; Fang H; Liu X; Ma L; Chen Y; Guo S; Chen X; Xi Y; Li G; Liang J; Yang X; Guo J; Jia J; Li Q; Cheng X; Zhan Q; Cui Y
    Am J Hum Genet; 2016 Feb; 98(2):256-74. PubMed ID: 26833333
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Complex structural rearrangements are present in high-grade dysplastic Barrett's oesophagus samples.
    Newell F; Patel K; Gartside M; Krause L; Brosda S; Aoude LG; Loffler KA; Bonazzi VF; Patch AM; Kazakoff SH; Holmes O; Xu Q; Wood S; Leonard C; Lampe G; Lord RV; Whiteman DC; Pearson JV; Nones K; Waddell N; Barbour AP
    BMC Med Genomics; 2019 Feb; 12(1):31. PubMed ID: 30717762
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
    Fujimoto A; Wong JH; Yoshii Y; Akiyama S; Tanaka A; Yagi H; Shigemizu D; Nakagawa H; Mizokami M; Shimada M
    Genome Med; 2021 Apr; 13(1):65. PubMed ID: 33910608
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
    Zhang Y; Chen F; Creighton CJ
    BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Disentangling oncogenic amplicons in esophageal adenocarcinoma.
    Ng AWT; McClurg DP; Wesley B; Zamani SA; Black E; Miremadi A; Giger O; Hoopen RT; Devonshire G; Redmond AM; Grehan N; Jammula S; Blasko A; Li X; Aparicio S; Tavaré S; ; Nowicki-Osuch K; Fitzgerald RC
    Nat Commun; 2024 May; 15(1):4074. PubMed ID: 38744814
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent
    Ooi WF; Nargund AM; Lim KJ; Zhang S; Xing M; Mandoli A; Lim JQ; Ho SWT; Guo Y; Yao X; Lin SJ; Nandi T; Xu C; Ong X; Lee M; Tan AL; Lam YN; Teo JX; Kaneda A; White KP; Lim WK; Rozen SG; Teh BT; Li S; Skanderup AJ; Tan P
    Gut; 2020 Jun; 69(6):1039-1052. PubMed ID: 31542774
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
    Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
    Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
    Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
    Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.
    Nones K; Waddell N; Wayte N; Patch AM; Bailey P; Newell F; Holmes O; Fink JL; Quinn MCJ; Tang YH; Lampe G; Quek K; Loffler KA; Manning S; Idrisoglu S; Miller D; Xu Q; Waddell N; Wilson PJ; Bruxner TJC; Christ AN; Harliwong I; Nourse C; Nourbakhsh E; Anderson M; Kazakoff S; Leonard C; Wood S; Simpson PT; Reid LE; Krause L; Hussey DJ; Watson DI; Lord RV; Nancarrow D; Phillips WA; Gotley D; Smithers BM; Whiteman DC; Hayward NK; Campbell PJ; Pearson JV; Grimmond SM; Barbour AP
    Nat Commun; 2014 Oct; 5():5224. PubMed ID: 25351503
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Human Structural Variation: Mechanisms of Chromosome Rearrangements.
    Weckselblatt B; Rudd MK
    Trends Genet; 2015 Oct; 31(10):587-599. PubMed ID: 26209074
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Landscape of genomic structural variations in Indian population-based cohorts: Deeper insights into their prevalence and clinical relevance.
    Subramanian K; Chopra M; Kahali B
    HGG Adv; 2024 Mar; 5(3):100285. PubMed ID: 38521976
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Intronic Breakpoint Signatures Enhance Detection and Characterization of Clinically Relevant Germline Structural Variants.
    van den Akker J; Hon L; Ondov A; Mahkovec Z; O'Connor R; Chan RC; Lock J; Zimmer AD; Rostamianfar A; Ginsberg J; Leon A; Topper S
    J Mol Diagn; 2021 May; 23(5):612-629. PubMed ID: 33621668
    [TBL] [Abstract][Full Text] [Related]  

  • 15. From cytogenetics to cytogenomics: whole-genome sequencing as a first-line test comprehensively captures the diverse spectrum of disease-causing genetic variation underlying intellectual disability.
    Lindstrand A; Eisfeldt J; Pettersson M; Carvalho CMB; Kvarnung M; Grigelioniene G; Anderlid BM; Bjerin O; Gustavsson P; Hammarsjö A; Georgii-Hemming P; Iwarsson E; Johansson-Soller M; Lagerstedt-Robinson K; Lieden A; Magnusson M; Martin M; Malmgren H; Nordenskjöld M; Norling A; Sahlin E; Stranneheim H; Tham E; Wincent J; Ygberg S; Wedell A; Wirta V; Nordgren A; Lundin J; Nilsson D
    Genome Med; 2019 Nov; 11(1):68. PubMed ID: 31694722
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RNA sequencing of esophageal adenocarcinomas identifies novel fusion transcripts, including NPC1-MELK, arising from a complex chromosomal rearrangement.
    Wang Z; Cheng Y; Abraham JM; Yan R; Liu X; Chen W; Ibrahim S; Schroth GP; Ke X; He Y; Meltzer SJ
    Cancer; 2017 Oct; 123(20):3916-3924. PubMed ID: 28640357
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Novel non-canonical genetic rearrangements termed "complex structural variations" in HBV genome.
    Fujiwara K; Matsunami K; Iio E; Nojiri S; Joh T
    Virus Res; 2017 Jun; 238():84-93. PubMed ID: 28627394
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of genomic indels and structural variations using split reads.
    Zhang ZD; Du J; Lam H; Abyzov A; Urban AE; Snyder M; Gerstein M
    BMC Genomics; 2011 Jul; 12():375. PubMed ID: 21787423
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition.
    Rodriguez-Martin B; Alvarez EG; Baez-Ortega A; Zamora J; Supek F; Demeulemeester J; Santamarina M; Ju YS; Temes J; Garcia-Souto D; Detering H; Li Y; Rodriguez-Castro J; Dueso-Barroso A; Bruzos AL; Dentro SC; Blanco MG; Contino G; Ardeljan D; Tojo M; Roberts ND; Zumalave S; Edwards PA; Weischenfeldt J; Puiggròs M; Chong Z; Chen K; Lee EA; Wala JA; Raine KM; Butler A; Waszak SM; Navarro FCP; Schumacher SE; Monlong J; Maura F; Bolli N; Bourque G; Gerstein M; Park PJ; Wedge DC; Beroukhim R; Torrents D; Korbel JO; Martincorena I; Fitzgerald RC; Van Loo P; Kazazian HH; Burns KH; ; Campbell PJ; Tubio JMC;
    Nat Genet; 2020 Mar; 52(3):306-319. PubMed ID: 32024998
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas.
    Lin DC; Dinh HQ; Xie JJ; Mayakonda A; Silva TC; Jiang YY; Ding LW; He JZ; Xu XE; Hao JJ; Wang MR; Li C; Xu LY; Li EM; Berman BP; Phillip Koeffler H
    Gut; 2018 Oct; 67(10):1769-1779. PubMed ID: 28860350
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.