303 related articles for article (PubMed ID: 35416715)
1. Amplicon Sequencing of Single-Copy Protein-Coding Genes Reveals Accurate Diversity for Sequence-Discrete Microbiome Populations.
Yang C; Su Q; Tang M; Luo S; Zheng H; Zhang X; Zhou X
Microbiol Spectr; 2022 Apr; 10(2):e0210521. PubMed ID: 35416715
[TBL] [Abstract][Full Text] [Related]
2. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
3. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
4. A multi-amplicon 16S rRNA sequencing and analysis method for improved taxonomic profiling of bacterial communities.
Schriefer AE; Cliften PF; Hibberd MC; Sawyer C; Brown-Kennerly V; Burcea L; Klotz E; Crosby SD; Gordon JI; Head RD
J Microbiol Methods; 2018 Nov; 154():6-13. PubMed ID: 30273610
[TBL] [Abstract][Full Text] [Related]
5. Marker genes as predictors of shared genomic function.
Sevigny JL; Rothenheber D; Diaz KS; Zhang Y; Agustsson K; Bergeron RD; Thomas WK
BMC Genomics; 2019 Apr; 20(1):268. PubMed ID: 30947688
[TBL] [Abstract][Full Text] [Related]
6. Bacterial and Eukaryotic Small-Subunit Amplicon Data Do Not Provide a Quantitative Picture of Microbial Communities, but They Are Reliable in the Context of Ecological Interpretations.
Piwosz K; Shabarova T; Pernthaler J; Posch T; Šimek K; Porcal P; Salcher MM
mSphere; 2020 Mar; 5(2):. PubMed ID: 32132159
[TBL] [Abstract][Full Text] [Related]
7. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
[TBL] [Abstract][Full Text] [Related]
8. Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome.
Kinoshita Y; Niwa H; Uchida-Fujii E; Nukada T
Sci Rep; 2021 Jun; 11(1):11884. PubMed ID: 34088956
[TBL] [Abstract][Full Text] [Related]
9. High-resolution ISR amplicon sequencing reveals personalized oral microbiome.
Mukherjee C; Beall CJ; Griffen AL; Leys EJ
Microbiome; 2018 Sep; 6(1):153. PubMed ID: 30185233
[TBL] [Abstract][Full Text] [Related]
10. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
11. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
[TBL] [Abstract][Full Text] [Related]
12. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
13. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
14. Comprehensive Assessment of 16S rRNA Gene Amplicon Sequencing for Microbiome Profiling across Multiple Habitats.
Zhang W; Fan X; Shi H; Li J; Zhang M; Zhao J; Su X
Microbiol Spectr; 2023 Jun; 11(3):e0056323. PubMed ID: 37102867
[TBL] [Abstract][Full Text] [Related]
15. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
[TBL] [Abstract][Full Text] [Related]
16. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
17. Microbial Diversity Biased Estimation Caused by Intragenomic Heterogeneity and Interspecific Conservation of 16S rRNA Genes.
Pan P; Gu Y; Sun DL; Wu QL; Zhou NY
Appl Environ Microbiol; 2023 May; 89(5):e0210822. PubMed ID: 37129483
[TBL] [Abstract][Full Text] [Related]
18. Characterization and Demonstration of Mock Communities as Control Reagents for Accurate Human Microbiome Community Measurements.
Tourlousse DM; Narita K; Miura T; Ohashi A; Matsuda M; Ohyama Y; Shimamura M; Furukawa M; Kasahara K; Kameyama K; Saito S; Goto M; Shimizu R; Mishima R; Nakayama J; Hosomi K; Kunisawa J; Terauchi J; Sekiguchi Y; Kawasaki H
Microbiol Spectr; 2022 Apr; 10(2):e0191521. PubMed ID: 35234490
[TBL] [Abstract][Full Text] [Related]
19. Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing.
Shin J; Lee S; Go MJ; Lee SY; Kim SC; Lee CH; Cho BK
Sci Rep; 2016 Jul; 6():29681. PubMed ID: 27411898
[TBL] [Abstract][Full Text] [Related]
20. An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
O'Sullivan DM; Doyle RM; Temisak S; Redshaw N; Whale AS; Logan G; Huang J; Fischer N; Amos GCA; Preston MD; Marchesi JR; Wagner J; Parkhill J; Motro Y; Denise H; Finn RD; Harris KA; Kay GL; O'Grady J; Ransom-Jones E; Wu H; Laing E; Studholme DJ; Benavente ED; Phelan J; Clark TG; Moran-Gilad J; Huggett JF
Sci Rep; 2021 May; 11(1):10590. PubMed ID: 34012005
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
