150 related articles for article (PubMed ID: 35422971)
1. SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array.
Wang Z; Tan J; Long Y; Liu Y; Lei W; Cai J; Yang Y; Liu Z
Comput Struct Biotechnol J; 2022; 20():1487-1493. PubMed ID: 35422971
[TBL] [Abstract][Full Text] [Related]
2. HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
Wan S; Zou Q
Algorithms Mol Biol; 2017; 12():25. PubMed ID: 29026435
[TBL] [Abstract][Full Text] [Related]
3. HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences.
Tang F; Chao J; Wei Y; Yang F; Zhai Y; Xu L; Zou Q
Mol Biol Evol; 2022 Aug; 39(8):. PubMed ID: 35915051
[TBL] [Abstract][Full Text] [Related]
4. Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.
Su W; Liao X; Lu Y; Zou Q; Peng S
J Comput Biol; 2017 Dec; 24(12):1230-1242. PubMed ID: 29116822
[TBL] [Abstract][Full Text] [Related]
5. Suffix tree searcher: exploration of common substrings in large DNA sequence sets.
Minkley D; Whitney MJ; Lin SH; Barsky MG; Kelly C; Upton C
BMC Res Notes; 2014 Jul; 7():466. PubMed ID: 25053142
[TBL] [Abstract][Full Text] [Related]
6. HIA: a genome mapper using hybrid index-based sequence alignment.
Choi J; Park K; Cho SB; Chung M
Algorithms Mol Biol; 2015; 10():30. PubMed ID: 26702294
[TBL] [Abstract][Full Text] [Related]
7. SPARK-MSNA: Efficient algorithm on Apache Spark for aligning multiple similar DNA/RNA sequences with supervised learning.
Vineetha V; Biji CL; Nair AS
Sci Rep; 2019 Apr; 9(1):6631. PubMed ID: 31036850
[TBL] [Abstract][Full Text] [Related]
8. CLAGen: a tool for clustering and annotating gene sequences using a suffix tree algorithm.
Han Si; Lee SG; Kim KH; Choi CJ; Kim YH; Hwang KS
Biosystems; 2006 Jun; 84(3):175-82. PubMed ID: 16384634
[TBL] [Abstract][Full Text] [Related]
9. A novel fast multiple nucleotide sequence alignment method based on FM-index.
Liu H; Zou Q; Xu Y
Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34893794
[TBL] [Abstract][Full Text] [Related]
10. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
Chen X; Wang C; Tang S; Yu C; Zou Q
BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
[TBL] [Abstract][Full Text] [Related]
11. WMSA: a novel method for multiple sequence alignment of DNA sequences.
Wei Y; Zou Q; Tang F; Yu L
Bioinformatics; 2022 Nov; 38(22):5019-5025. PubMed ID: 36179076
[TBL] [Abstract][Full Text] [Related]
12. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization.
Katoh K; Rozewicki J; Yamada KD
Brief Bioinform; 2019 Jul; 20(4):1160-1166. PubMed ID: 28968734
[TBL] [Abstract][Full Text] [Related]
13. The generalised k-Truncated Suffix Tree for time-and space-efficient searches in multiple DNA or protein sequences.
Schulz MH; Bauer S; Robinson PN
Int J Bioinform Res Appl; 2008; 4(1):81-95. PubMed ID: 18283030
[TBL] [Abstract][Full Text] [Related]
14. mkESA: enhanced suffix array construction tool.
Homann R; Fleer D; Giegerich R; Rehmsmeier M
Bioinformatics; 2009 Apr; 25(8):1084-5. PubMed ID: 19246510
[TBL] [Abstract][Full Text] [Related]
15. HAlign: Fast multiple similar DNA/RNA sequence alignment based on the centre star strategy.
Zou Q; Hu Q; Guo M; Wang G
Bioinformatics; 2015 Aug; 31(15):2475-81. PubMed ID: 25812743
[TBL] [Abstract][Full Text] [Related]
16. CSA: an efficient algorithm to improve circular DNA multiple alignment.
Fernandes F; Pereira L; Freitas AT
BMC Bioinformatics; 2009 Jul; 10():230. PubMed ID: 19627599
[TBL] [Abstract][Full Text] [Related]
17. FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets.
Zhang P; Liu H; Wei Y; Zhai Y; Tian Q; Zou Q
Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38200554
[TBL] [Abstract][Full Text] [Related]
18. Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison.
Leimeister CA; Morgenstern B
Bioinformatics; 2014 Jul; 30(14):2000-8. PubMed ID: 24828656
[TBL] [Abstract][Full Text] [Related]
19. Multiple alignment of DNA sequences with MAFFT.
Katoh K; Asimenos G; Toh H
Methods Mol Biol; 2009; 537():39-64. PubMed ID: 19378139
[TBL] [Abstract][Full Text] [Related]
20. WMSA 2: a multiple DNA/RNA sequence alignment tool implemented with accurate progressive mode and a fast win-win mode combining the center star and progressive strategies.
Chen J; Chao J; Liu H; Yang F; Zou Q; Tang F
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200156
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]