BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

142 related articles for article (PubMed ID: 35437474)

  • 1. PipeCoV: a pipeline for SARS-CoV-2 genome assembly, annotation and variant identification.
    Oliveira RRM; Costa Negri T; Nunes G; Medeiros I; Araújo G; de Oliveira Silva F; Estefano Santana de Souza J; Alves R; Oliveira G
    PeerJ; 2022; 10():e13300. PubMed ID: 35437474
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Comparison of Bioinformatics Pipelines for Enrichment Illumina Next Generation Sequencing Systems in Detecting SARS-CoV-2 Virus Strains.
    Afiahayati ; Bernard S; Gunadi ; Wibawa H; Hakim MS; Marcellus ; Parikesit AA; Dewa CK; Sakakibara Y
    Genes (Basel); 2022 Jul; 13(8):. PubMed ID: 35893066
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank.
    Underwood BA; Yankie L; Nawrocki EP; Palanigobu V; Gotvyanskyy S; Calhoun VC; Kornbluh M; Smith TG; Fleischmann L; Sinyakov D; Bollin CJ; Karsch-Mizrachi I
    Database (Oxford); 2022 Mar; 2022():. PubMed ID: 35230423
    [TBL] [Abstract][Full Text] [Related]  

  • 4. VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank.
    Shean RC; Makhsous N; Stoddard GD; Lin MJ; Greninger AL
    BMC Bioinformatics; 2019 Jan; 20(1):48. PubMed ID: 30674273
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants.
    Jaworski E; Langsjoen RM; Mitchell B; Judy B; Newman P; Plante JA; Plante KS; Miller AL; Zhou Y; Swetnam D; Sotcheff S; Morris V; Saada N; Machado RR; McConnell A; Widen SG; Thompson J; Dong J; Ren P; Pyles RB; Ksiazek TG; Menachery VD; Weaver SC; Routh AL
    Elife; 2021 Sep; 10():. PubMed ID: 34581669
    [TBL] [Abstract][Full Text] [Related]  

  • 6. EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts.
    Lo CC; Shakya M; Connor R; Davenport K; Flynn M; Gutiérrez AMY; Hu B; Li PE; Jackson EP; Xu Y; Chain PSG
    Bioinformatics; 2022 May; 38(10):2700-2704. PubMed ID: 35561186
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Targeted Hybridization Capture of SARS-CoV-2 and Metagenomics Enables Genetic Variant Discovery and Nasal Microbiome Insights.
    Nagy-Szakal D; Couto-Rodriguez M; Wells HL; Barrows JE; Debieu M; Butcher K; Chen S; Berki A; Hager C; Boorstein RJ; Taylor MK; Jonsson CB; Mason CE; O'Hara NB
    Microbiol Spectr; 2021 Oct; 9(2):e0019721. PubMed ID: 34468193
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SARS-CoV-2 Sequencing for Variant Surveillance.
    Hirschhorn JW; Dunne J
    Methods Mol Biol; 2023; 2621():279-292. PubMed ID: 37041451
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A comprehensive genomic study, mutation screening, phylogenetic and statistical analysis of SARS-CoV-2 and its variant omicron among different countries.
    Ahmad SU; Hafeez Kiani B; Abrar M; Jan Z; Zafar I; Ali Y; Alanazi AM; Malik A; Rather MA; Ahmad A; Khan AA
    J Infect Public Health; 2022 Aug; 15(8):878-891. PubMed ID: 35839568
    [TBL] [Abstract][Full Text] [Related]  

  • 10. INSaFLU-TELEVIR: an open web-based bioinformatics suite for viral metagenomic detection and routine genomic surveillance.
    Santos JD; Sobral D; Pinheiro M; Isidro J; Bogaardt C; Pinto M; Eusébio R; Santos A; Mamede R; Horton DL; Gomes JP; ; Borges V
    Genome Med; 2024 Apr; 16(1):61. PubMed ID: 38659008
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comparative Genomics Reveals Early Emergence and Biased Spatiotemporal Distribution of SARS-CoV-2.
    Chiara M; Horner DS; Gissi C; Pesole G
    Mol Biol Evol; 2021 May; 38(6):2547-2565. PubMed ID: 33605421
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Benchmarking and Assessment of Eight
    Gupta AK; Kumar M
    OMICS; 2022 Jul; 26(7):372-381. PubMed ID: 35759429
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evolutionary Tracking of SARS-CoV-2 Genetic Variants Highlights an Intricate Balance of Stabilizing and Destabilizing Mutations.
    Jacob JJ; Vasudevan K; Pragasam AK; Gunasekaran K; Veeraraghavan B; Mutreja A
    mBio; 2021 Aug; 12(4):e0118821. PubMed ID: 34281387
    [TBL] [Abstract][Full Text] [Related]  

  • 14. ViralFlow: A Versatile Automated Workflow for SARS-CoV-2 Genome Assembly, Lineage Assignment, Mutations and Intrahost Variant Detection.
    Dezordi FZ; Neto AMDS; Campos TL; Jeronimo PMC; Aksenen CF; Almeida SP; Wallau GL; On Behalf Of The Fiocruz Covid-Genomic Surveillance Network
    Viruses; 2022 Jan; 14(2):. PubMed ID: 35215811
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
    De Silva NH; Bhai J; Chakiachvili M; Contreras-Moreira B; Cummins C; Frankish A; Gall A; Genez T; Howe KL; Hunt SE; Martin FJ; Moore B; Ogeh D; Parker A; Parton A; Ruffier M; Sakthivel MP; Sheppard D; Tate J; Thormann A; Thybert D; Trevanion SJ; Winterbottom A; Zerbino DR; Finn RD; Flicek P; Yates AD
    Nucleic Acids Res; 2022 Jan; 50(D1):D765-D770. PubMed ID: 34634797
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Role of genomics in combating COVID-19 pandemic.
    Saravanan KA; Panigrahi M; Kumar H; Rajawat D; Nayak SS; Bhushan B; Dutt T
    Gene; 2022 May; 823():146387. PubMed ID: 35248659
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing the hidden diversity underlying consensus sequences of SARS-CoV-2 using VICOS, a novel bioinformatic pipeline for identification of mixed viral populations.
    Goya S; Sosa E; Nabaes Jodar M; Torres C; König G; Acuña D; Ceballos S; Distéfano AJ; Dopazo H; Dus Santos M; Fass M; Fernández Do Porto D; Fernández A; Gallego F; Gismondi MI; Gramundi I; Lusso S; Martí M; Mazzeo M; Mistchenko AS; Muñoz Hidalgo M; Natale M; Nardi C; Ousset J; Peralta AV; Pintos C; Puebla AF; Pianciola L; Rivarola M; Turjanski A; Valinotto L; Vera PA; Zaiat J; Zubrycki J; ; Aulicino P; Viegas M
    Virus Res; 2023 Feb; 325():199035. PubMed ID: 36586487
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Coronapp: A web application to annotate and monitor SARS-CoV-2 mutations.
    Mercatelli D; Triboli L; Fornasari E; Ray F; Giorgi FM
    J Med Virol; 2021 May; 93(5):3238-3245. PubMed ID: 33205830
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SARS-CoV-2 variant identification using a genome tiling array and genotyping probes.
    Shimada R; Alden EN; Hoff K; Ding X; Sun J; Halasz AM; Zhou W; Edwards JS
    Per Med; 2023 Jan; 20(1):13-25. PubMed ID: 36974726
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SARS-CoV-2 historical global testing and genomic variability.
    Tannous H; Akiki S; E Boulos R; El Khoury Eid C; El Hasbani G; Khoueiry LM; El Khoury L; Tohme R; Moussa R; Khazen G
    BMC Infect Dis; 2022 Apr; 22(1):322. PubMed ID: 35365069
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.