These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 35440038)

  • 1. PEGR: a flexible management platform for reproducible epigenomic and genomic research.
    Shao D; Kellogg GD; Nematbakhsh A; Kuntala PK; Mahony S; Pugh BF; Lai WKM
    Genome Biol; 2022 Apr; 23(1):99. PubMed ID: 35440038
    [TBL] [Abstract][Full Text] [Related]  

  • 2. PEGR: a management platform for ChIP-based next generation sequencing pipelines.
    Shao D; Kellogg G; Mahony S; Lai W; Pugh BF
    PEARC20 (2020); 2020 Jul; 2020():285-292. PubMed ID: 35662897
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization.
    Wolff J; Bhardwaj V; Nothjunge S; Richard G; Renschler G; Gilsbach R; Manke T; Backofen R; Ramírez F; Grüning BA
    Nucleic Acids Res; 2018 Jul; 46(W1):W11-W16. PubMed ID: 29901812
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AnFiSA: An open-source computational platform for the analysis of sequencing data for rare genetic disease.
    Bouzinier MA; Etin D; Trifonov SI; Evdokimova VN; Ulitin V; Shen J; Kokorev A; Ghazani AA; Chekaluk Y; Albertyn Z; Giersch A; Morton CC; Abraamyan F; Bendapudi PK; Sunyaev S; Undiagnosed Diseases Network ; Brigham Genomic Medicine ; SEQuencing A Baby For An Optimal Outcome ; Quantori ; Krier JB
    J Biomed Inform; 2022 Sep; 133():104174. PubMed ID: 35998814
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The missing graphical user interface for genomics.
    Schatz MC
    Genome Biol; 2010; 11(8):128. PubMed ID: 20804568
    [TBL] [Abstract][Full Text] [Related]  

  • 6. VING: a software for visualization of deep sequencing signals.
    Descrimes M; Ben Zouari Y; Wery M; Legendre R; Gautheret D; Morillon A
    BMC Res Notes; 2015 Sep; 8():419. PubMed ID: 26346985
    [TBL] [Abstract][Full Text] [Related]  

  • 7. svist4get: a simple visualization tool for genomic tracks from sequencing experiments.
    Egorov AA; Sakharova EA; Anisimova AS; Dmitriev SE; Gladyshev VN; Kulakovskiy IV
    BMC Bioinformatics; 2019 Mar; 20(1):113. PubMed ID: 30841857
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PiGx: reproducible genomics analysis pipelines with GNU Guix.
    Wurmus R; Uyar B; Osberg B; Franke V; Gosdschan A; Wreczycka K; Ronen J; Akalin A
    Gigascience; 2018 Dec; 7(12):. PubMed ID: 30277498
    [TBL] [Abstract][Full Text] [Related]  

  • 9. methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.
    Kishore K; de Pretis S; Lister R; Morelli MJ; Bianchi V; Amati B; Ecker JR; Pelizzola M
    BMC Bioinformatics; 2015 Sep; 16():313. PubMed ID: 26415965
    [TBL] [Abstract][Full Text] [Related]  

  • 10. GenomicTools: a computational platform for developing high-throughput analytics in genomics.
    Tsirigos A; Haiminen N; Bilal E; Utro F
    Bioinformatics; 2012 Jan; 28(2):282-3. PubMed ID: 22113082
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hadoop and PySpark for reproducibility and scalability of genomic sequencing studies.
    Wheeler NR; Benchek P; Kunkle BW; Hamilton-Nelson KL; Warfe M; Fondran JR; Haines JL; Bush WS
    Pac Symp Biocomput; 2020; 25():523-534. PubMed ID: 31797624
    [TBL] [Abstract][Full Text] [Related]  

  • 12. GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome.
    Simovski B; Vodák D; Gundersen S; Domanska D; Azab A; Holden L; Holden M; Grytten I; Rand K; Drabløs F; Johansen M; Mora A; Lund-Andersen C; Fromm B; Eskeland R; Gabrielsen OS; Ferkingstad E; Nakken S; Bengtsen M; Nederbragt AJ; Thorarensen HS; Akse JA; Glad I; Hovig E; Sandve GK
    Gigascience; 2017 Jul; 6(7):1-12. PubMed ID: 28459977
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Single-Cell Genomics and Epigenomics: Technologies and Applications in Plants.
    Luo C; Fernie AR; Yan J
    Trends Plant Sci; 2020 Oct; 25(10):1030-1040. PubMed ID: 32532595
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.
    Goecks J; Nekrutenko A; Taylor J;
    Genome Biol; 2010; 11(8):R86. PubMed ID: 20738864
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ALEA: a toolbox for allele-specific epigenomics analysis.
    Younesy H; Möller T; Heravi-Moussavi A; Cheng JB; Costello JF; Lorincz MC; Karimi MM; Jones SJ
    Bioinformatics; 2014 Apr; 30(8):1172-1174. PubMed ID: 24371156
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GenoMetric Query Language: a novel approach to large-scale genomic data management.
    Masseroli M; Pinoli P; Venco F; Kaitoua A; Jalili V; Palluzzi F; Muller H; Ceri S
    Bioinformatics; 2015 Jun; 31(12):1881-8. PubMed ID: 25649616
    [TBL] [Abstract][Full Text] [Related]  

  • 17. STENCIL: A web templating engine for visualizing and sharing life science datasets.
    Sun Q; Nematbakhsh A; Kuntala PK; Kellogg G; Pugh BF; Lai WKM
    PLoS Comput Biol; 2022 Feb; 18(2):e1009859. PubMed ID: 35139076
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Xenbase: a genomic, epigenomic and transcriptomic model organism database.
    Karimi K; Fortriede JD; Lotay VS; Burns KA; Wang DZ; Fisher ME; Pells TJ; James-Zorn C; Wang Y; Ponferrada VG; Chu S; Chaturvedi P; Zorn AM; Vize PD
    Nucleic Acids Res; 2018 Jan; 46(D1):D861-D868. PubMed ID: 29059324
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Data quality of whole genome bisulfite sequencing on Illumina platforms.
    Raine A; Liljedahl U; Nordlund J
    PLoS One; 2018; 13(4):e0195972. PubMed ID: 29668744
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 8.