184 related articles for article (PubMed ID: 35441669)
1. STAAR workflow: a cloud-based workflow for scalable and reproducible rare variant analysis.
Gaynor SM; Westerman KE; Ackovic LL; Li X; Li Z; Manning AK; Philippakis A; Lin X
Bioinformatics; 2022 May; 38(11):3116-3117. PubMed ID: 35441669
[TBL] [Abstract][Full Text] [Related]
2. Tibanna: software for scalable execution of portable pipelines on the cloud.
Lee S; Johnson J; Vitzthum C; Kırlı K; Alver BH; Park PJ
Bioinformatics; 2019 Nov; 35(21):4424-4426. PubMed ID: 31077294
[TBL] [Abstract][Full Text] [Related]
3. SciApps: a cloud-based platform for reproducible bioinformatics workflows.
Wang L; Lu Z; Van Buren P; Ware D
Bioinformatics; 2018 Nov; 34(22):3917-3920. PubMed ID: 29897418
[TBL] [Abstract][Full Text] [Related]
4. The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
Yuen D; Cabansay L; Duncan A; Luu G; Hogue G; Overbeck C; Perez N; Shands W; Steinberg D; Reid C; Olunwa N; Hansen R; Sheets E; O'Farrell A; Cullion K; O'Connor BD; Paten B; Stein L
Nucleic Acids Res; 2021 Jul; 49(W1):W624-W632. PubMed ID: 33978761
[TBL] [Abstract][Full Text] [Related]
5. nf-core/nanostring: a pipeline for reproducible NanoString nCounter analysis.
Peltzer A; Mohr C; Stadermann KB; Zwick M; Schmid R
Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38212989
[TBL] [Abstract][Full Text] [Related]
6. Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.
Garcia M; Juhos S; Larsson M; Olason PI; Martin M; Eisfeldt J; DiLorenzo S; Sandgren J; Díaz De Ståhl T; Ewels P; Wirta V; Nistér M; Käller M; Nystedt B
F1000Res; 2020; 9():63. PubMed ID: 32269765
[TBL] [Abstract][Full Text] [Related]
7. CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.
Bais P; Namburi S; Gatti DM; Zhang X; Chuang JH
Bioinformatics; 2017 Oct; 33(19):3110-3112. PubMed ID: 28605406
[TBL] [Abstract][Full Text] [Related]
8. Accelerating bioinformatics implementation in public health.
Libuit KG; Doughty EL; Otieno JR; Ambrosio F; Kapsak CJ; Smith EA; Wright SM; Scribner MR; Petit Iii RA; Mendes CI; Huergo M; Legacki G; Loreth C; Park DJ; Sevinsky JR
Microb Genom; 2023 Jul; 9(7):. PubMed ID: 37428142
[TBL] [Abstract][Full Text] [Related]
9. COWID: an efficient cloud-based genomics workflow for scalable identification of SARS-COV-2.
Lim HG; Fann YC; Lee YG
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37738400
[TBL] [Abstract][Full Text] [Related]
10. PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
Liu Y; Khan SM; Wang J; Rynge M; Zhang Y; Zeng S; Chen S; Maldonado Dos Santos JV; Valliyodan B; Calyam PP; Merchant N; Nguyen HT; Xu D; Joshi T
BMC Bioinformatics; 2016 Oct; 17(Suppl 13):337. PubMed ID: 27766951
[TBL] [Abstract][Full Text] [Related]
11. TransFlow: a Snakemake workflow for transmission analysis of Mycobacterium tuberculosis whole-genome sequencing data.
Pan J; Li X; Zhang M; Lu Y; Zhu Y; Wu K; Wu Y; Wang W; Chen B; Liu Z; Wang X; Gao J
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36469333
[TBL] [Abstract][Full Text] [Related]
12. Mapache: a flexible pipeline to map ancient DNA.
Neuenschwander S; Cruz Dávalos DI; Anchieri L; Sousa da Mota B; Bozzi D; Rubinacci S; Delaneau O; Rasmussen S; Malaspinas AS
Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36637197
[TBL] [Abstract][Full Text] [Related]
13. Founder reconstruction enables scalable and seamless pangenomic analysis.
Norri T; Cazaux B; Dönges S; Valenzuela D; Mäkinen V
Bioinformatics; 2021 Dec; 37(24):4611-4619. PubMed ID: 34260702
[TBL] [Abstract][Full Text] [Related]
14. Closha: bioinformatics workflow system for the analysis of massive sequencing data.
Ko G; Kim PG; Yoon J; Han G; Park SJ; Song W; Lee B
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):43. PubMed ID: 29504905
[TBL] [Abstract][Full Text] [Related]
15. Genome analysis and knowledge-driven variant interpretation with TGex.
Dahary D; Golan Y; Mazor Y; Zelig O; Barshir R; Twik M; Iny Stein T; Rosner G; Kariv R; Chen F; Zhang Q; Shen Y; Safran M; Lancet D; Fishilevich S
BMC Med Genomics; 2019 Dec; 12(1):200. PubMed ID: 31888639
[TBL] [Abstract][Full Text] [Related]
16. JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
Ahmed Z; Renart EG; Mishra D; Zeeshan S
FEBS Open Bio; 2021 Sep; 11(9):2441-2452. PubMed ID: 34370400
[TBL] [Abstract][Full Text] [Related]
17. QuagmiR: a cloud-based application for isomiR big data analytics.
Bofill-De Ros X; Chen K; Chen S; Tesic N; Randjelovic D; Skundric N; Nesic S; Varjacic V; Williams EH; Malhotra R; Jiang M; Gu S
Bioinformatics; 2019 May; 35(9):1576-1578. PubMed ID: 30295744
[TBL] [Abstract][Full Text] [Related]
18. MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.
Elshazly H; Souilmi Y; Tonellato PJ; Wall DP; Abouelhoda M
BMC Bioinformatics; 2017 Jan; 18(1):49. PubMed ID: 28107819
[TBL] [Abstract][Full Text] [Related]
19. PSReliP: an integrated pipeline for analysis and visualization of population structure and relatedness based on genome-wide genetic variant data.
Solovieva E; Sakai H
BMC Bioinformatics; 2023 Apr; 24(1):135. PubMed ID: 37020193
[TBL] [Abstract][Full Text] [Related]
20. Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale.
Li X; Li Z; Zhou H; Gaynor SM; Liu Y; Chen H; Sun R; Dey R; Arnett DK; Aslibekyan S; Ballantyne CM; Bielak LF; Blangero J; Boerwinkle E; Bowden DW; Broome JG; Conomos MP; Correa A; Cupples LA; Curran JE; Freedman BI; Guo X; Hindy G; Irvin MR; Kardia SLR; Kathiresan S; Khan AT; Kooperberg CL; Laurie CC; Liu XS; Mahaney MC; Manichaikul AW; Martin LW; Mathias RA; McGarvey ST; Mitchell BD; Montasser ME; Moore JE; Morrison AC; O'Connell JR; Palmer ND; Pampana A; Peralta JM; Peyser PA; Psaty BM; Redline S; Rice KM; Rich SS; Smith JA; Tiwari HK; Tsai MY; Vasan RS; Wang FF; Weeks DE; Weng Z; Wilson JG; Yanek LR; ; ; Neale BM; Sunyaev SR; Abecasis GR; Rotter JI; Willer CJ; Peloso GM; Natarajan P; Lin X
Nat Genet; 2020 Sep; 52(9):969-983. PubMed ID: 32839606
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
