183 related articles for article (PubMed ID: 35446579)
21. Combining percolator with X!Tandem for accurate and sensitive peptide identification.
Xu M; Li Z; Li L
J Proteome Res; 2013 Jun; 12(6):3026-33. PubMed ID: 23581882
[TBL] [Abstract][Full Text] [Related]
22. Improving X!Tandem on peptide identification from mass spectrometry by self-boosted Percolator.
Yang P; Ma J; Wang P; Zhu Y; Zhou BB; Yang YH
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(5):1273-80. PubMed ID: 22689082
[TBL] [Abstract][Full Text] [Related]
23. Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) data.
Lam H; Aebersold R
Curr Protoc Protein Sci; 2010 Apr; Chapter 25():25.5.1-25.5.9. PubMed ID: 20393975
[TBL] [Abstract][Full Text] [Related]
24. Spectral library searching for peptide identification via tandem MS.
Lam H; Aebersold R
Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
[TBL] [Abstract][Full Text] [Related]
25. inSPIRE: An Open-Source Tool for Increased Mass Spectrometry Identification Rates Using Prosit Spectral Prediction.
Cormican JA; Horokhovskyi Y; Soh WT; Mishto M; Liepe J
Mol Cell Proteomics; 2022 Dec; 21(12):100432. PubMed ID: 36280141
[TBL] [Abstract][Full Text] [Related]
26. Implementing the MSFragger Search Engine as a Node in Proteome Discoverer.
Chang HY; Haynes SE; Yu F; Nesvizhskii AI
J Proteome Res; 2023 Feb; 22(2):520-525. PubMed ID: 36475762
[TBL] [Abstract][Full Text] [Related]
27. iBench: A ground truth approach for advanced validation of mass spectrometry identification method.
Cormican JA; Soh WT; Mishto M; Liepe J
Proteomics; 2023 Jan; 23(2):e2200271. PubMed ID: 36189881
[TBL] [Abstract][Full Text] [Related]
28. Sipros Ensemble improves database searching and filtering for complex metaproteomics.
Guo X; Li Z; Yao Q; Mueller RS; Eng JK; Tabb DL; Hervey WJ; Pan C
Bioinformatics; 2018 Mar; 34(5):795-802. PubMed ID: 29028897
[TBL] [Abstract][Full Text] [Related]
29. Building and searching tandem mass (MS/MS) spectral libraries for peptide identification in proteomics.
Lam H; Aebersold R
Methods; 2011 Aug; 54(4):424-31. PubMed ID: 21277371
[TBL] [Abstract][Full Text] [Related]
30.
Schallert K; Verschaffelt P; Mesuere B; Benndorf D; Martens L; Van Den Bossche T
J Proteome Res; 2022 Apr; 21(4):1175-1180. PubMed ID: 35143215
[TBL] [Abstract][Full Text] [Related]
31. In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.
Audain E; Uszkoreit J; Sachsenberg T; Pfeuffer J; Liang X; Hermjakob H; Sanchez A; Eisenacher M; Reinert K; Tabb DL; Kohlbacher O; Perez-Riverol Y
J Proteomics; 2017 Jan; 150():170-182. PubMed ID: 27498275
[TBL] [Abstract][Full Text] [Related]
32. Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions.
C Silva AS; Bouwmeester R; Martens L; Degroeve S
Bioinformatics; 2019 Dec; 35(24):5243-5248. PubMed ID: 31077310
[TBL] [Abstract][Full Text] [Related]
33. Development and validation of a spectral library searching method for peptide identification from MS/MS.
Lam H; Deutsch EW; Eddes JS; Eng JK; King N; Stein SE; Aebersold R
Proteomics; 2007 Mar; 7(5):655-67. PubMed ID: 17295354
[TBL] [Abstract][Full Text] [Related]
34. SpecEncoder: deep metric learning for accurate peptide identification in proteomics.
Liu K; Tao C; Ye Y; Tang H
Bioinformatics; 2024 Jun; 40(Supplement_1):i257-i265. PubMed ID: 38940141
[TBL] [Abstract][Full Text] [Related]
35. A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.
Wang L; Liu K; Li S; Tang H
Proteomics; 2020 Nov; 20(21-22):e2000002. PubMed ID: 32415809
[TBL] [Abstract][Full Text] [Related]
36. Understanding the improved sensitivity of spectral library searching over sequence database searching in proteomics data analysis.
Zhang X; Li Y; Shao W; Lam H
Proteomics; 2011 Mar; 11(6):1075-85. PubMed ID: 21298786
[TBL] [Abstract][Full Text] [Related]
37. A semi-empirical approach for predicting unobserved peptide MS/MS spectra from spectral libraries.
Hu Y; Li Y; Lam H
Proteomics; 2011 Dec; 11(24):4702-11. PubMed ID: 22038894
[TBL] [Abstract][Full Text] [Related]
38. False Discovery Rate Estimation for Hybrid Mass Spectral Library Search Identifications in Bottom-up Proteomics.
Burke MC; Zhang Z; Mirokhin YA; Tchekovskoi DV; Liang Y; Stein SE
J Proteome Res; 2019 Sep; 18(9):3223-3234. PubMed ID: 31364354
[TBL] [Abstract][Full Text] [Related]
39. TIDD: tool-independent and data-dependent machine learning for peptide identification.
Li H; Na S; Hwang KB; Paek E
BMC Bioinformatics; 2022 Mar; 23(1):109. PubMed ID: 35354356
[TBL] [Abstract][Full Text] [Related]
40. Calibr improves spectral library search for spectrum-centric analysis of data independent acquisition proteomics.
Wang JH; Choong WK; Chen CT; Sung TY
Sci Rep; 2022 Feb; 12(1):2045. PubMed ID: 35132134
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]