BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 35456896)

  • 1. ASTool: An Easy-to-Use Tool to Accurately Identify Alternative Splicing Events from Plant RNA-Seq Data.
    Qi H; Guo X; Wang T; Zhang Z
    Int J Mol Sci; 2022 Apr; 23(8):. PubMed ID: 35456896
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparisons of computational methods for differential alternative splicing detection using RNA-seq in plant systems.
    Liu R; Loraine AE; Dickerson JA
    BMC Bioinformatics; 2014 Dec; 15(1):364. PubMed ID: 25511303
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
    Gulledge AA; Roberts AD; Vora H; Patel K; Loraine AE
    Am J Bot; 2012 Feb; 99(2):219-31. PubMed ID: 22291167
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Method to Quantitatively Examine Heat Stress-Induced Alternative Splicing in Plants by RNA-Seq and RT-PCR.
    Ling Y; Mo Y; Chen S; Mahfouz MM
    Methods Mol Biol; 2024; 2832():81-98. PubMed ID: 38869789
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
    Li Y; Rao X; Mattox WW; Amos CI; Liu B
    PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Detection of generic differential RNA processing events from RNA-seq data.
    Tran Vdu T; Souiai O; Romero-Barrios N; Crespi M; Gautheret D
    RNA Biol; 2016; 13(1):59-67. PubMed ID: 26849165
    [TBL] [Abstract][Full Text] [Related]  

  • 8. IRcall and IRclassifier: two methods for flexible detection of intron retention events from RNA-Seq data.
    Bai Y; Ji S; Wang Y
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S9. PubMed ID: 25707295
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.
    Ye Z; Chen Z; Lan X; Hara S; Sunkel B; Huang TH; Elnitski L; Wang Q; Jin VX
    Nucleic Acids Res; 2014 Mar; 42(5):2856-69. PubMed ID: 24369421
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comprehensive profiling of alternative splicing landscape during cold acclimation in tea plant.
    Li Y; Mi X; Zhao S; Zhu J; Guo R; Xia X; Liu L; Liu S; Wei C
    BMC Genomics; 2020 Jan; 21(1):65. PubMed ID: 31959105
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A novel computational method for the identification of plant alternative splice sites.
    Cui Y; Han J; Zhong D; Liu R
    Biochem Biophys Res Commun; 2013 Feb; 431(2):221-4. PubMed ID: 23313482
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CASH: a constructing comprehensive splice site method for detecting alternative splicing events.
    Wu W; Zong J; Wei N; Cheng J; Zhou X; Cheng Y; Chen D; Guo Q; Zhang B; Feng Y
    Brief Bioinform; 2018 Sep; 19(5):905-917. PubMed ID: 28387786
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comprehensive benchmarking of differential splicing tools for RNA-seq analysis at the event level.
    Jiang M; Zhang S; Yin H; Zhuo Z; Meng G
    Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37020334
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.
    Filichkin SA; Mockler TC
    Biol Direct; 2012 Jul; 7():20. PubMed ID: 22747664
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays.
    Eichner J; Zeller G; Laubinger S; Rätsch G
    BMC Bioinformatics; 2011 Feb; 12():55. PubMed ID: 21324185
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates.
    Gildea MA; Dwyer ZW; Pleiss JA
    Methods; 2020 Apr; 176():34-45. PubMed ID: 31121301
    [TBL] [Abstract][Full Text] [Related]  

  • 19. 3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists.
    Guo W; Tzioutziou NA; Stephen G; Milne I; Calixto CP; Waugh R; Brown JWS; Zhang R
    RNA Biol; 2021 Nov; 18(11):1574-1587. PubMed ID: 33345702
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data.
    Rogers MF; Thomas J; Reddy AS; Ben-Hur A
    Genome Biol; 2012 Jan; 13(1):R4. PubMed ID: 22293517
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.