These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 35458504)

  • 1. An Evaluation of Phylogenetic Workflows in Viral Molecular Epidemiology.
    Young C; Meng S; Moshiri N
    Viruses; 2022 Apr; 14(4):. PubMed ID: 35458504
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation.
    Liu K; Linder CR; Warnow T
    PLoS One; 2011; 6(11):e27731. PubMed ID: 22132132
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets.
    Zhou X; Shen XX; Hittinger CT; Rokas A
    Mol Biol Evol; 2018 Feb; 35(2):486-503. PubMed ID: 29177474
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FastTree 2--approximately maximum-likelihood trees for large alignments.
    Price MN; Dehal PS; Arkin AP
    PLoS One; 2010 Mar; 5(3):e9490. PubMed ID: 20224823
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
    Nelesen S; Liu K; Zhao D; Linder CR; Warnow T
    Pac Symp Biocomput; 2008; ():25-36. PubMed ID: 18229674
    [TBL] [Abstract][Full Text] [Related]  

  • 6. PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.
    Bhardwaj G; Ko KD; Hong Y; Zhang Z; Ho NL; Chintapalli SV; Kline LA; Gotlin M; Hartranft DN; Patterson ME; Dave F; Smith EJ; Holmes EC; Patterson RL; van Rossum DB
    PLoS One; 2012; 7(4):e34261. PubMed ID: 22514627
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Prediction of missing sequences and branch lengths in phylogenomic data.
    Darriba D; Weiß M; Stamatakis A
    Bioinformatics; 2016 May; 32(9):1331-7. PubMed ID: 26733454
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Multiple sequence alignment accuracy and phylogenetic inference.
    Ogden TH; Rosenberg MS
    Syst Biol; 2006 Apr; 55(2):314-28. PubMed ID: 16611602
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
    Xia X
    Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Phylogeny Estimation Given Sequence Length Heterogeneity.
    Smirnov V; Warnow T
    Syst Biol; 2021 Feb; 70(2):268-282. PubMed ID: 32692823
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking.
    Bogusz M; Whelan S
    Syst Biol; 2017 Mar; 66(2):218-231. PubMed ID: 27633353
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Free Lunch is not over yet-systematic exploration of numerical thresholds in maximum likelihood phylogenetic inference.
    Haag J; Hübner L; Kozlov AM; Stamatakis A
    Bioinform Adv; 2023; 3(1):vbad124. PubMed ID: 37750068
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix.
    Price MN; Dehal PS; Arkin AP
    Mol Biol Evol; 2009 Jul; 26(7):1641-50. PubMed ID: 19377059
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Phylogenic inference using alignment-free methods for applications in microbial community surveys using 16s rRNA gene.
    Zhang Y; Alekseyenko AV
    PLoS One; 2017; 12(11):e0187940. PubMed ID: 29136663
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data.
    Mao Y; Hou S; Shi J; Economo EP
    Mol Ecol Resour; 2020 May; 20(3):. PubMed ID: 32073732
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NGPhylogeny.fr: new generation phylogenetic services for non-specialists.
    Lemoine F; Correia D; Lefort V; Doppelt-Azeroual O; Mareuil F; Cohen-Boulakia S; Gascuel O
    Nucleic Acids Res; 2019 Jul; 47(W1):W260-W265. PubMed ID: 31028399
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Gene Tree Estimation Error with Ultraconserved Elements: An Empirical Study on Pseudapis Bees.
    Bossert S; Murray EA; Pauly A; Chernyshov K; Brady SG; Danforth BN
    Syst Biol; 2021 Jun; 70(4):803-821. PubMed ID: 33367855
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Alignment and topological accuracy of the direct optimization approach via POY and traditional phylogenetics via ClustalW + PAUP*.
    Ogden TH; Rosenberg MS
    Syst Biol; 2007 Apr; 56(2):182-93. PubMed ID: 17454974
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
    Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
    Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
    Kozlov AM; Darriba D; Flouri T; Morel B; Stamatakis A
    Bioinformatics; 2019 Nov; 35(21):4453-4455. PubMed ID: 31070718
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.