BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 35463156)

  • 1. Integrating transcription-factor abundance with chromatin accessibility in human erythroid lineage commitment.
    Baskar R; Chen AF; Favaro P; Reynolds W; Mueller F; Borges L; Jiang S; Park HS; Kool ET; Greenleaf WJ; Bendall SC
    Cell Rep Methods; 2022 Mar; 2(3):. PubMed ID: 35463156
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation.
    Georgolopoulos G; Psatha N; Iwata M; Nishida A; Som T; Yiangou M; Stamatoyannopoulos JA; Vierstra J
    Nat Commun; 2021 Nov; 12(1):6790. PubMed ID: 34815405
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation.
    Li Y; Schulz VP; Deng C; Li G; Shen Y; Tusi BK; Ma G; Stees J; Qiu Y; Steiner LA; Zhou L; Zhao K; Bungert J; Gallagher PG; Huang S
    Nucleic Acids Res; 2016 Sep; 44(15):7173-88. PubMed ID: 27141965
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MEDEA: analysis of transcription factor binding motifs in accessible chromatin.
    Mariani L; Weinand K; Gisselbrecht SS; Bulyk ML
    Genome Res; 2020 May; 30(5):736-748. PubMed ID: 32424069
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.
    Kumar S; Bucher P
    BMC Bioinformatics; 2016 Jan; 17 Suppl 1(Suppl 1):4. PubMed ID: 26818008
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Regulatory association of long noncoding RNAs and chromatin accessibility facilitates erythroid differentiation.
    Ren Y; Zhu J; Han Y; Li P; Wu J; Qu H; Zhang Z; Fang X
    Blood Adv; 2021 Dec; 5(23):5396-5409. PubMed ID: 34644394
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2.
    Anguita E; Hughes J; Heyworth C; Blobel GA; Wood WG; Higgs DR
    EMBO J; 2004 Jul; 23(14):2841-52. PubMed ID: 15215894
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dynamic analysis of gene expression and genome-wide transcription factor binding during lineage specification of multipotent progenitors.
    May G; Soneji S; Tipping AJ; Teles J; McGowan SJ; Wu M; Guo Y; Fugazza C; Brown J; Karlsson G; Pina C; Olariu V; Taylor S; Tenen DG; Peterson C; Enver T
    Cell Stem Cell; 2013 Dec; 13(6):754-68. PubMed ID: 24120743
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.
    Pimkin M; Kossenkov AV; Mishra T; Morrissey CS; Wu W; Keller CA; Blobel GA; Lee D; Beer MA; Hardison RC; Weiss MJ
    Genome Res; 2014 Dec; 24(12):1932-44. PubMed ID: 25319996
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility.
    Liu S; Zibetti C; Wan J; Wang G; Blackshaw S; Qian J
    BMC Bioinformatics; 2017 Jul; 18(1):355. PubMed ID: 28750606
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
    Huang L; Li X; Dong L; Wang B; Pan L
    BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcription Factor Repertoire of Homeostatic Eosinophilopoiesis.
    Bouffi C; Kartashov AV; Schollaert KL; Chen X; Bacon WC; Weirauch MT; Barski A; Fulkerson PC
    J Immunol; 2015 Sep; 195(6):2683-95. PubMed ID: 26268651
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells.
    Chen AF; Parks B; Kathiria AS; Ober-Reynolds B; Goronzy JJ; Greenleaf WJ
    Nat Methods; 2022 May; 19(5):547-553. PubMed ID: 35501385
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The transcription factor reservoir and chromatin landscape in activated plasmacytoid dendritic cells.
    Mann-Nüttel R; Ali S; Petzsch P; Köhrer K; Alferink J; Scheu S
    BMC Genom Data; 2021 Sep; 22(1):37. PubMed ID: 34544361
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Erythroid lineage chromatin accessibility maps facilitate identification and validation of NFIX as a fetal hemoglobin repressor.
    Chaand M; Fiore C; Johnston B; D'Ippolito A; Moon DH; Carulli JP; Shearstone JR
    Commun Biol; 2023 Jun; 6(1):640. PubMed ID: 37316562
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transcription of the SCL gene in erythroid and CD34 positive primitive myeloid cells is controlled by a complex network of lineage-restricted chromatin-dependent and chromatin-independent regulatory elements.
    Göttgens B; McLaughlin F; Bockamp EO; Fordham JL; Begley CG; Kosmopoulos K; Elefanty AG; Green AR
    Oncogene; 1997 Nov; 15(20):2419-28. PubMed ID: 9395238
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment.
    Romano O; Peano C; Tagliazucchi GM; Petiti L; Poletti V; Cocchiarella F; Rizzi E; Severgnini M; Cavazza A; Rossi C; Pagliaro P; Ambrosi A; Ferrari G; Bicciato S; De Bellis G; Mavilio F; Miccio A
    Sci Rep; 2016 Apr; 6():24724. PubMed ID: 27095295
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity.
    Kim TH; Li F; Ferreiro-Neira I; Ho LL; Luyten A; Nalapareddy K; Long H; Verzi M; Shivdasani RA
    Nature; 2014 Feb; 506(7489):511-5. PubMed ID: 24413398
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Dynamic transcription factor activity profiles reveal key regulatory interactions during megakaryocytic and erythroid differentiation.
    Duncan MT; Shin S; Wu JJ; Mays Z; Weng S; Bagheri N; Miller WM; Shea LD
    Biotechnol Bioeng; 2014 Oct; 111(10):2082-94. PubMed ID: 24853077
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Interplay between regulatory elements and chromatin topology in cellular lineage determination.
    Shukla V; Cetnarowska A; Hyldahl M; Mandrup S
    Trends Genet; 2022 Oct; 38(10):1048-1061. PubMed ID: 35688654
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.