These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

262 related articles for article (PubMed ID: 35502739)

  • 1. GIANI - open-source software for automated analysis of 3D microscopy images.
    Barry DJ; Gerri C; Bell DM; D'Antuono R; Niakan KK
    J Cell Sci; 2022 May; 135(10):. PubMed ID: 35502739
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automatic three-dimensional segmentation of mouse embryonic stem cell nuclei by utilising multiple channels of confocal fluorescence images.
    Chang YH; Yokota H; Abe K; Tasi MD; Chu SL
    J Microsc; 2021 Jan; 281(1):57-75. PubMed ID: 32720710
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images.
    Haass-Koffler CL; Naeemuddin M; Bartlett SE
    J Vis Exp; 2012 Aug; (66):e4233. PubMed ID: 22951512
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Segmentor: a tool for manual refinement of 3D microscopy annotations.
    Borland D; McCormick CM; Patel NK; Krupa O; Mory JT; Beltran AA; Farah TM; Escobar-Tomlienovich CF; Olson SS; Kim M; Wu G; Stein JL
    BMC Bioinformatics; 2021 May; 22(1):260. PubMed ID: 34022787
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Whole-Brain Image Analysis and Anatomical Atlas 3D Generation Using MagellanMapper.
    Young DM; Duhn C; Gilson M; Nojima M; Yuruk D; Kumar A; Yu W; Sanders SJ
    Curr Protoc Neurosci; 2020 Dec; 94(1):e104. PubMed ID: 32981139
    [TBL] [Abstract][Full Text] [Related]  

  • 6. FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy.
    Memmel S; Sisario D; Zimmermann H; Sauer M; Sukhorukov VL; Djuzenova CS; Flentje M
    BMC Bioinformatics; 2020 Jan; 21(1):27. PubMed ID: 31992200
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CellWalker: a user-friendly and modular computational pipeline for morphological analysis of microscopy images.
    Khare H; Dongo Mendoza N; Zurzolo C
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38060265
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition.
    Mathew B; Schmitz A; Muñoz-Descalzo S; Ansari N; Pampaloni F; Stelzer EH; Fischer SC
    BMC Bioinformatics; 2015 Jun; 16():187. PubMed ID: 26049713
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies.
    Bokota G; Sroka J; Basu S; Das N; Trzaskoma P; Yushkevich Y; Grabowska A; Magalska A; Plewczynski D
    BMC Bioinformatics; 2021 Feb; 22(1):72. PubMed ID: 33596823
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Qiber3D-an open-source software package for the quantitative analysis of networks from 3D image stacks.
    Jaeschke A; Eckert H; Bray LJ
    Gigascience; 2022 Feb; 11():. PubMed ID: 35134926
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
    Sage D; Pham TA; Babcock H; Lukes T; Pengo T; Chao J; Velmurugan R; Herbert A; Agrawal A; Colabrese S; Wheeler A; Archetti A; Rieger B; Ober R; Hagen GM; Sibarita JB; Ries J; Henriques R; Unser M; Holden S
    Nat Methods; 2019 May; 16(5):387-395. PubMed ID: 30962624
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fiji: an open-source platform for biological-image analysis.
    Schindelin J; Arganda-Carreras I; Frise E; Kaynig V; Longair M; Pietzsch T; Preibisch S; Rueden C; Saalfeld S; Schmid B; Tinevez JY; White DJ; Hartenstein V; Eliceiri K; Tomancak P; Cardona A
    Nat Methods; 2012 Jun; 9(7):676-82. PubMed ID: 22743772
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SynBot is an open-source image analysis software for automated quantification of synapses.
    Savage JT; Ramirez JJ; Risher WC; Wang Y; Irala D; Eroglu C
    Cell Rep Methods; 2024 Sep; 4(9):100861. PubMed ID: 39255792
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A rapid and efficient 2D/3D nuclear segmentation method for analysis of early mouse embryo and stem cell image data.
    Lou X; Kang M; Xenopoulos P; Muñoz-Descalzo S; Hadjantonakis AK
    Stem Cell Reports; 2014 Mar; 2(3):382-97. PubMed ID: 24672759
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NODeJ: an ImageJ plugin for 3D segmentation of nuclear objects.
    Dubos T; Poulet A; Thomson G; Péry E; Chausse F; Tatout C; Desset S; van Wolfswinkel JC; Jacob Y
    BMC Bioinformatics; 2022 Jun; 23(1):216. PubMed ID: 35668354
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Segmentation and quantitative analysis of individual cells in developmental tissues.
    Nandy K; Kim J; McCullough DP; McAuliffe M; Meaburn KJ; Yamaguchi TP; Gudla PR; Lockett SJ
    Methods Mol Biol; 2014; 1092():235-53. PubMed ID: 24318825
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Multi-template matching: a versatile tool for object-localization in microscopy images.
    Thomas LSV; Gehrig J
    BMC Bioinformatics; 2020 Feb; 21(1):44. PubMed ID: 32024462
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences.
    Wait E; Winter M; Bjornsson C; Kokovay E; Wang Y; Goderie S; Temple S; Cohen AR
    BMC Bioinformatics; 2014 Oct; 15(1):328. PubMed ID: 25281197
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A lightweight rapid application development framework for biomedical image analysis.
    Chandra SS; Dowling JA; Engstrom C; Xia Y; Paproki A; Neubert A; Rivest-Hénault D; Salvado O; Crozier S; Fripp J
    Comput Methods Programs Biomed; 2018 Oct; 164():193-205. PubMed ID: 30195427
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Extracting multiple surfaces from 3D microscopy images in complex biological tissues with the Zellige software tool.
    Trébeau C; de Monvel JB; Altay G; Tinevez JY; Etournay R
    BMC Biol; 2022 Aug; 20(1):183. PubMed ID: 35999534
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.