146 related articles for article (PubMed ID: 35511713)
1. AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era.
Ly-Trong N; Naser-Khdour S; Lanfear R; Minh BQ
Mol Biol Evol; 2022 May; 39(5):. PubMed ID: 35511713
[TBL] [Abstract][Full Text] [Related]
2. AliSim-HPC: parallel sequence simulator for phylogenetics.
Ly-Trong N; Barca GMJ; Minh BQ
Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37656933
[TBL] [Abstract][Full Text] [Related]
3. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.
Minh BQ; Schmidt HA; Chernomor O; Schrempf D; Woodhams MD; von Haeseler A; Lanfear R
Mol Biol Evol; 2020 May; 37(5):1530-1534. PubMed ID: 32011700
[TBL] [Abstract][Full Text] [Related]
4. DNA assembly with gaps (Dawg): simulating sequence evolution.
Cartwright RA
Bioinformatics; 2005 Nov; 21 Suppl 3():iii31-8. PubMed ID: 16306390
[TBL] [Abstract][Full Text] [Related]
5. indel-Seq-Gen: a new protein family simulator incorporating domains, motifs, and indels.
Strope CL; Scott SD; Moriyama EN
Mol Biol Evol; 2007 Mar; 24(3):640-9. PubMed ID: 17158778
[TBL] [Abstract][Full Text] [Related]
6. QMaker: Fast and Accurate Method to Estimate Empirical Models of Protein Evolution.
Minh BQ; Dang CC; Vinh LS; Lanfear R
Syst Biol; 2021 Aug; 70(5):1046-1060. PubMed ID: 33616668
[TBL] [Abstract][Full Text] [Related]
7. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
Rambaut A; Grassly NC
Comput Appl Biosci; 1997 Jun; 13(3):235-8. PubMed ID: 9183526
[TBL] [Abstract][Full Text] [Related]
8. INDELible: a flexible simulator of biological sequence evolution.
Fletcher W; Yang Z
Mol Biol Evol; 2009 Aug; 26(8):1879-88. PubMed ID: 19423664
[TBL] [Abstract][Full Text] [Related]
9. GHOST: Recovering Historical Signal from Heterotachously Evolved Sequence Alignments.
Crotty SM; Minh BQ; Bean NG; Holland BR; Tuke J; Jermiin LS; Haeseler AV
Syst Biol; 2020 Mar; 69(2):249-264. PubMed ID: 31364711
[TBL] [Abstract][Full Text] [Related]
10. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Nguyen LT; Schmidt HA; von Haeseler A; Minh BQ
Mol Biol Evol; 2015 Jan; 32(1):268-74. PubMed ID: 25371430
[TBL] [Abstract][Full Text] [Related]
11. nQMaker: Estimating Time Nonreversible Amino Acid Substitution Models.
Dang CC; Minh BQ; McShea H; Masel J; James JE; Vinh LS; Lanfear R
Syst Biol; 2022 Aug; 71(5):1110-1123. PubMed ID: 35139203
[TBL] [Abstract][Full Text] [Related]
12. BEAST: Bayesian evolutionary analysis by sampling trees.
Drummond AJ; Rambaut A
BMC Evol Biol; 2007 Nov; 7():214. PubMed ID: 17996036
[TBL] [Abstract][Full Text] [Related]
13. New Methods to Calculate Concordance Factors for Phylogenomic Datasets.
Minh BQ; Hahn MW; Lanfear R
Mol Biol Evol; 2020 Sep; 37(9):2727-2733. PubMed ID: 32365179
[TBL] [Abstract][Full Text] [Related]
14. DecentTree: scalable Neighbour-Joining for the genomic era.
Wang W; Barbetti J; Wong T; Thornlow B; Corbett-Detig R; Turakhia Y; Lanfear R; Minh BQ
Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37651445
[TBL] [Abstract][Full Text] [Related]
15. The Prevalence and Impact of Model Violations in Phylogenetic Analysis.
Naser-Khdour S; Minh BQ; Zhang W; Stone EA; Lanfear R
Genome Biol Evol; 2019 Dec; 11(12):3341-3352. PubMed ID: 31536115
[TBL] [Abstract][Full Text] [Related]
16. πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
Bielejec F; Lemey P; Carvalho LM; Baele G; Rambaut A; Suchard MA
BMC Bioinformatics; 2014 May; 15():133. PubMed ID: 24885610
[TBL] [Abstract][Full Text] [Related]
17. HyPhy: hypothesis testing using phylogenies.
Pond SL; Frost SD; Muse SV
Bioinformatics; 2005 Mar; 21(5):676-9. PubMed ID: 15509596
[TBL] [Abstract][Full Text] [Related]
18. DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution.
Xia X
J Hered; 2017 Jun; 108(4):431-437. PubMed ID: 28379490
[TBL] [Abstract][Full Text] [Related]
19. In silico sequence evolution with site-specific interactions along phylogenetic trees.
Gesell T; von Haeseler A
Bioinformatics; 2006 Mar; 22(6):716-22. PubMed ID: 16332711
[TBL] [Abstract][Full Text] [Related]
20. PhyloMAd: efficient assessment of phylogenomic model adequacy.
Duchêne DA; Duchêne S; Ho SYW
Bioinformatics; 2018 Jul; 34(13):2300-2301. PubMed ID: 29481585
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]