231 related articles for article (PubMed ID: 35524550)
1. Human activation-induced deaminase lacks strong replicative strand bias or preference for cytosines in hairpin loops.
Sakhtemani R; Perera MLW; Hübschmann D; Siebert R; Lawrence MS; Bhagwat AS
Nucleic Acids Res; 2022 May; 50(9):5145-5157. PubMed ID: 35524550
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide mapping of regions preferentially targeted by the human DNA-cytosine deaminase APOBEC3A using uracil-DNA pulldown and sequencing.
Sakhtemani R; Senevirathne V; Stewart J; Perera MLW; Pique-Regi R; Lawrence MS; Bhagwat AS
J Biol Chem; 2019 Oct; 294(41):15037-15051. PubMed ID: 31431505
[TBL] [Abstract][Full Text] [Related]
3. Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations.
Sohail A; Klapacz J; Samaranayake M; Ullah A; Bhagwat AS
Nucleic Acids Res; 2003 Jun; 31(12):2990-4. PubMed ID: 12799424
[TBL] [Abstract][Full Text] [Related]
4. Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations.
Butt Y; Sakhtemani R; Mohamad-Ramshan R; Lawrence MS; Bhagwat AS
Nat Commun; 2024 Mar; 15(1):2369. PubMed ID: 38499553
[TBL] [Abstract][Full Text] [Related]
5. Immunoglobulin Class Switch Recombination Is Initiated by Rare Cytosine Deamination Events at Switch Regions.
Kim A; Han L; Yu K
Mol Cell Biol; 2020 Jul; 40(16):. PubMed ID: 32513818
[TBL] [Abstract][Full Text] [Related]
6. Distinguishing preferences of human APOBEC3A and APOBEC3B for cytosines in hairpin loops, and reflection of these preferences in APOBEC-signature cancer genome mutations.
Butt Y; Sakhtemani R; Mohamad-Ramshan R; Lawrence MS; Bhagwat AS
bioRxiv; 2023 Aug; ():. PubMed ID: 37577595
[TBL] [Abstract][Full Text] [Related]
7. Deoxyuridine is generated preferentially in the nontranscribed strand of DNA from cells expressing activation-induced cytidine deaminase.
Martomo SA; Fu D; Yang WW; Joshi NS; Gearhart PJ
J Immunol; 2005 Jun; 174(12):7787-91. PubMed ID: 15944282
[TBL] [Abstract][Full Text] [Related]
8. Strand-biased spreading of mutations during somatic hypermutation.
Unniraman S; Schatz DG
Science; 2007 Aug; 317(5842):1227-30. PubMed ID: 17761884
[TBL] [Abstract][Full Text] [Related]
9. R-Loop Depletion by Over-expressed RNase H1 in Mouse B Cells Increases Activation-Induced Deaminase Access to the Transcribed Strand without Altering Frequency of Isotype Switching.
Maul RW; Chon H; Sakhuja K; Cerritelli SM; Gugliotti LA; Gearhart PJ; Crouch RJ
J Mol Biol; 2017 Oct; 429(21):3255-3263. PubMed ID: 28065739
[TBL] [Abstract][Full Text] [Related]
10. Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks.
Stewart JA; Schauer G; Bhagwat AS
Nucleic Acids Res; 2020 Nov; 48(20):e118. PubMed ID: 33074285
[TBL] [Abstract][Full Text] [Related]
11. Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli.
Bhagwat AS; Hao W; Townes JP; Lee H; Tang H; Foster PL
Proc Natl Acad Sci U S A; 2016 Feb; 113(8):2176-81. PubMed ID: 26839411
[TBL] [Abstract][Full Text] [Related]
12. Single-strand DNA breaks in Ig class switch recombination that depend on UNG but not AID.
Arudchandran A; Bernstein RM; Max EE
Int Immunol; 2008 Nov; 20(11):1381-93. PubMed ID: 18794203
[TBL] [Abstract][Full Text] [Related]
13. Current insights into the mechanism of mammalian immunoglobulin class switch recombination.
Yu K; Lieber MR
Crit Rev Biochem Mol Biol; 2019 Aug; 54(4):333-351. PubMed ID: 31509023
[TBL] [Abstract][Full Text] [Related]
14. B cells from hyper-IgM patients carrying UNG mutations lack ability to remove uracil from ssDNA and have elevated genomic uracil.
Kavli B; Andersen S; Otterlei M; Liabakk NB; Imai K; Fischer A; Durandy A; Krokan HE; Slupphaug G
J Exp Med; 2005 Jun; 201(12):2011-21. PubMed ID: 15967827
[TBL] [Abstract][Full Text] [Related]
15. Non-canonical uracil processing in DNA gives rise to double-strand breaks and deletions: relevance to class switch recombination.
Bregenhorn S; Kallenberger L; Artola-Borán M; Peña-Diaz J; Jiricny J
Nucleic Acids Res; 2016 Apr; 44(6):2691-705. PubMed ID: 26743004
[TBL] [Abstract][Full Text] [Related]
16. AID preferentially targets the top strand in nucleosome sequences.
Singh AK; Jaiswal A; Kodgire P
Mol Immunol; 2019 Aug; 112():198-205. PubMed ID: 31176199
[TBL] [Abstract][Full Text] [Related]
17. Controlling somatic hypermutation in immunoglobulin variable and switch regions.
Maul RW; Gearhart PJ
Immunol Res; 2010 Jul; 47(1-3):113-22. PubMed ID: 20082153
[TBL] [Abstract][Full Text] [Related]
18. The block in immunoglobulin class switch recombination caused by activation-induced cytidine deaminase deficiency occurs prior to the generation of DNA double strand breaks in switch mu region.
Catalan N; Selz F; Imai K; Revy P; Fischer A; Durandy A
J Immunol; 2003 Sep; 171(5):2504-9. PubMed ID: 12928399
[TBL] [Abstract][Full Text] [Related]
19. Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand.
Ramiro AR; Stavropoulos P; Jankovic M; Nussenzweig MC
Nat Immunol; 2003 May; 4(5):452-6. PubMed ID: 12692548
[TBL] [Abstract][Full Text] [Related]
20. Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.
Pefanis E; Wang J; Rothschild G; Lim J; Chao J; Rabadan R; Economides AN; Basu U
Nature; 2014 Oct; 514(7522):389-93. PubMed ID: 25119026
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]