132 related articles for article (PubMed ID: 35525918)
1. HGGA: hierarchical guided genome assembler.
Walve R; Salmela L
BMC Bioinformatics; 2022 May; 23(1):167. PubMed ID: 35525918
[TBL] [Abstract][Full Text] [Related]
2. Optical map guided genome assembly.
Leinonen M; Salmela L
BMC Bioinformatics; 2020 Jul; 21(1):285. PubMed ID: 32631227
[TBL] [Abstract][Full Text] [Related]
3. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
[TBL] [Abstract][Full Text] [Related]
4. Kermit: linkage map guided long read assembly.
Walve R; Rastas P; Salmela L
Algorithms Mol Biol; 2019; 14():8. PubMed ID: 30930956
[TBL] [Abstract][Full Text] [Related]
5. U
Castro CJ; Ng TFF
J Comput Biol; 2017 Nov; 24(11):1071-1080. PubMed ID: 28418726
[TBL] [Abstract][Full Text] [Related]
6. Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.
Sohn JI; Nam K; Hong H; Kim JM; Lim D; Lee KT; Do YJ; Cho CY; Kim N; Chai HH; Nam JW
Gigascience; 2018 Jul; 7(7):. PubMed ID: 30010758
[TBL] [Abstract][Full Text] [Related]
7. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
8. Linked read technology for assembling large complex and polyploid genomes.
Ott A; Schnable JC; Yeh CT; Wu L; Liu C; Hu HC; Dalgard CL; Sarkar S; Schnable PS
BMC Genomics; 2018 Sep; 19(1):651. PubMed ID: 30180802
[TBL] [Abstract][Full Text] [Related]
9. OMGS: Optical Map-Based Genome Scaffolding.
Pan W; Jiang T; Lonardi S
J Comput Biol; 2020 Apr; 27(4):519-533. PubMed ID: 31794680
[TBL] [Abstract][Full Text] [Related]
10. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
11. A combined de novo assembly approach increases the quality of prokaryotic draft genomes.
Çabuk U; Ünlü ES
Folia Microbiol (Praha); 2022 Oct; 67(5):801-810. PubMed ID: 35668290
[TBL] [Abstract][Full Text] [Related]
12. GapFiller: a de novo assembly approach to fill the gap within paired reads.
Nadalin F; Vezzi F; Policriti A
BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S8. PubMed ID: 23095524
[TBL] [Abstract][Full Text] [Related]
13. BASE: a practical de novo assembler for large genomes using long NGS reads.
Liu B; Liu CM; Li D; Li Y; Ting HF; Yiu SM; Luo R; Lam TW
BMC Genomics; 2016 Aug; 17 Suppl 5(Suppl 5):499. PubMed ID: 27586129
[TBL] [Abstract][Full Text] [Related]
14. FastEtch: A Fast Sketch-Based Assembler for Genomes.
Ghosh P; Kalyanaraman A
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
[TBL] [Abstract][Full Text] [Related]
15. An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing.
Zimin AV; Stevens KA; Crepeau MW; Puiu D; Wegrzyn JL; Yorke JA; Langley CH; Neale DB; Salzberg SL
Gigascience; 2017 Jan; 6(1):1-4. PubMed ID: 28369353
[TBL] [Abstract][Full Text] [Related]
16. De novo chromosome level assembly of a plant genome from long read sequence data.
Sharma P; Masouleh AK; Topp B; Furtado A; Henry RJ
Plant J; 2022 Feb; 109(3):727-736. PubMed ID: 34784084
[TBL] [Abstract][Full Text] [Related]
17. Evaluation of nine popular de novo assemblers in microbial genome assembly.
Forouzan E; Maleki MSM; Karkhane AA; Yakhchali B
J Microbiol Methods; 2017 Dec; 143():32-37. PubMed ID: 28939423
[TBL] [Abstract][Full Text] [Related]
18. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
19. SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome.
Stadermann KB; Weisshaar B; Holtgräwe D
BMC Bioinformatics; 2015 Sep; 16(1):295. PubMed ID: 26377912
[TBL] [Abstract][Full Text] [Related]
20. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
