112 related articles for article (PubMed ID: 35543460)
1. BioExcel Building Blocks REST API (BioBB REST API), programmatic access to interoperable biomolecular simulation tools.
Bayarri G; Andrio P; Hospital A; Orozco M; Gelpí JL
Bioinformatics; 2022 Jun; 38(12):3302-3303. PubMed ID: 35543460
[TBL] [Abstract][Full Text] [Related]
2. BioExcel Building Blocks Workflows (BioBB-Wfs), an integrated web-based platform for biomolecular simulations.
Bayarri G; Andrio P; Hospital A; Orozco M; Gelpí JL
Nucleic Acids Res; 2022 Jul; 50(W1):W99-W107. PubMed ID: 35639735
[TBL] [Abstract][Full Text] [Related]
3. BioExcel Building Blocks, a software library for interoperable biomolecular simulation workflows.
Andrio P; Hospital A; Conejero J; Jordá L; Del Pino M; Codo L; Soiland-Reyes S; Goble C; Lezzi D; Badia RM; Orozco M; Gelpi JL
Sci Data; 2019 Sep; 6(1):169. PubMed ID: 31506435
[TBL] [Abstract][Full Text] [Related]
4. Programmatic access to logical models in the Cell Collective modeling environment via a REST API.
Kowal BM; Schreier TR; Dauer JT; Helikar T
Biosystems; 2016 Jan; 139():12-6. PubMed ID: 26589448
[TBL] [Abstract][Full Text] [Related]
5. PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.
Nair S; Váradi M; Nadzirin N; Pravda L; Anyango S; Mir S; Berrisford J; Armstrong D; Gutmanas A; Velankar S
Bioinformatics; 2021 Nov; 37(21):3950-3952. PubMed ID: 34081107
[TBL] [Abstract][Full Text] [Related]
6. Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows.
Bayarri G; Andrio P; Gelpí JL; Hospital A; Orozco M
PLoS Comput Biol; 2024 Jun; 20(6):e1012173. PubMed ID: 38900779
[TBL] [Abstract][Full Text] [Related]
7. JASPAR RESTful API: accessing JASPAR data from any programming language.
Khan A; Mathelier A
Bioinformatics; 2018 May; 34(9):1612-1614. PubMed ID: 29253085
[TBL] [Abstract][Full Text] [Related]
8. HOMELETTE: a unified interface to homology modelling software.
Junk P; Kiel C
Bioinformatics; 2022 Mar; 38(6):1749-1751. PubMed ID: 34954790
[TBL] [Abstract][Full Text] [Related]
9. PyGOLD: a python based API for docking based virtual screening workflow generation.
Patel H; Brinkjost T; Koch O
Bioinformatics; 2017 Aug; 33(16):2589-2590. PubMed ID: 28398502
[TBL] [Abstract][Full Text] [Related]
10. Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.
Rueda M; Ariosa R; Moldes M; Rambla J
Bioinformatics; 2022 Sep; 38(19):4656-4657. PubMed ID: 35980167
[TBL] [Abstract][Full Text] [Related]
11. The structural bioinformatics library: modeling in biomolecular science and beyond.
Cazals F; Dreyfus T
Bioinformatics; 2017 Apr; 33(7):997-1004. PubMed ID: 28062450
[TBL] [Abstract][Full Text] [Related]
12. eSBMTools 1.0: enhanced native structure-based modeling tools.
Lutz B; Sinner C; Heuermann G; Verma A; Schug A
Bioinformatics; 2013 Nov; 29(21):2795-6. PubMed ID: 24021379
[TBL] [Abstract][Full Text] [Related]
13. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R
Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694
[TBL] [Abstract][Full Text] [Related]
14. gmxapi: a high-level interface for advanced control and extension of molecular dynamics simulations.
Irrgang ME; Hays JM; Kasson PM
Bioinformatics; 2018 Nov; 34(22):3945-3947. PubMed ID: 29912282
[TBL] [Abstract][Full Text] [Related]
15. A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort.
Beltrán D; Hospital A; Gelpí JL; Orozco M
Nucleic Acids Res; 2024 Jan; 52(D1):D393-D403. PubMed ID: 37953362
[TBL] [Abstract][Full Text] [Related]
16. Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE).
Senapathi T; Bray S; Barnett CB; Grüning B; Naidoo KJ
Bioinformatics; 2019 Sep; 35(18):3508-3509. PubMed ID: 30759217
[TBL] [Abstract][Full Text] [Related]
17. Phenopacket-tools: Building and validating GA4GH Phenopackets.
Danis D; Jacobsen JOB; Wagner AH; Groza T; Beckwith MA; Rekerle L; Carmody LC; Reese J; Hegde H; Ladewig MS; Seitz B; Munoz-Torres M; Harris NL; Rambla J; Baudis M; Mungall CJ; Haendel MA; Robinson PN
PLoS One; 2023; 18(5):e0285433. PubMed ID: 37196000
[TBL] [Abstract][Full Text] [Related]
18. Molywood: streamlining the design and rendering of molecular movies.
Wieczór M; Hospital A; Bayarri G; Czub J; Orozco M
Bioinformatics; 2020 Nov; 36(17):4660-4661. PubMed ID: 32573714
[TBL] [Abstract][Full Text] [Related]
19. GlyGen data model and processing workflow.
Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
[TBL] [Abstract][Full Text] [Related]
20. MDWeb and MDMoby: an integrated web-based platform for molecular dynamics simulations.
Hospital A; Andrio P; Fenollosa C; Cicin-Sain D; Orozco M; Gelpí JL
Bioinformatics; 2012 May; 28(9):1278-9. PubMed ID: 22437851
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]