These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

187 related articles for article (PubMed ID: 35576204)

  • 1. A model for isoform-level differential expression analysis using RNA-seq data without pre-specifying isoform structure.
    Liu Y; Wang J; Wu S; Yang J
    PLoS One; 2022; 17(5):e0266162. PubMed ID: 35576204
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Improving RNA-Seq expression estimation by modeling isoform- and exon-specific read sequencing rate.
    Liu X; Shi X; Chen C; Zhang L
    BMC Bioinformatics; 2015 Oct; 16():332. PubMed ID: 26475308
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples.
    Yalamanchili HK; Li Z; Wang P; Wong MP; Yao J; Wang J
    Nucleic Acids Res; 2014 Sep; 42(15):e121. PubMed ID: 25034693
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Transcript Identification Through Long-Read Sequencing.
    Seki M; Oka M; Xu L; Suzuki A; Suzuki Y
    Methods Mol Biol; 2021; 2284():531-541. PubMed ID: 33835462
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.
    Xia Z; Wen J; Chang CC; Zhou X
    BMC Bioinformatics; 2011 May; 12():162. PubMed ID: 21575225
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrative analysis of Iso-Seq and RNA-seq data reveals transcriptome complexity and differential isoform in skin tissues of different hair length Yak.
    Zhou X; Wu X; Pei C; He M; Chu M; Guo X; Liang C; Bao P; Yan P
    BMC Genomics; 2024 May; 25(1):498. PubMed ID: 38773419
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching.
    Rehrauer H; Opitz L; Tan G; Sieverling L; Schlapbach R
    BMC Bioinformatics; 2013 Dec; 14():370. PubMed ID: 24365034
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation.
    Li JJ; Jiang CR; Brown JB; Huang H; Bickel PJ
    Proc Natl Acad Sci U S A; 2011 Dec; 108(50):19867-72. PubMed ID: 22135461
    [TBL] [Abstract][Full Text] [Related]  

  • 10. cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
    Meleshko D; Prjbelski AD; Raiko M; Tomescu AI; Tilgner H; Hajirasouliha I
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38262343
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies.
    Merino GA; Conesa A; Fernández EA
    Brief Bioinform; 2019 Mar; 20(2):471-481. PubMed ID: 29040385
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Studying Isoform-Specific mRNA Recruitment to Polyribosomes with Frac-seq.
    Martinez-Nunez RT; Sanford JR
    Methods Mol Biol; 2016; 1358():99-108. PubMed ID: 26463379
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Differential splicing analysis based on isoforms expression with NBSplice.
    Merino GA; Fernández EA
    J Biomed Inform; 2020 Mar; 103():103378. PubMed ID: 31972288
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An evaluation of RNA-seq differential analysis methods.
    Li D; Zand MS; Dye TD; Goniewicz ML; Rahman I; Xie Z
    PLoS One; 2022; 17(9):e0264246. PubMed ID: 36112652
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Transcript Profiling Using Long-Read Sequencing Technologies.
    Bayega A; Wang YC; Oikonomopoulos S; Djambazian H; Fahiminiya S; Ragoussis J
    Methods Mol Biol; 2018; 1783():121-147. PubMed ID: 29767360
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Expression and splicing mediate distinct biological signals.
    Dam SH; Olsen LR; Vitting-Seerup K
    BMC Biol; 2023 Oct; 21(1):220. PubMed ID: 37858135
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identifying differentially spliced genes from two groups of RNA-seq samples.
    Wang W; Qin Z; Feng Z; Wang X; Zhang X
    Gene; 2013 Apr; 518(1):164-70. PubMed ID: 23228854
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data.
    Huang Y; Sanguinetti G
    Methods Mol Biol; 2019; 1935():175-185. PubMed ID: 30758827
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 20. FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
    Singh D; Orellana CF; Hu Y; Jones CD; Liu Y; Chiang DY; Liu J; Prins JF
    Bioinformatics; 2011 Oct; 27(19):2633-40. PubMed ID: 21824971
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.