These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

209 related articles for article (PubMed ID: 35581222)

  • 1. Nucleotide-amino acid π-stacking interactions initiate photo cross-linking in RNA-protein complexes.
    Knörlein A; Sarnowski CP; de Vries T; Stoltz M; Götze M; Aebersold R; Allain FH; Leitner A; Hall J
    Nat Commun; 2022 May; 13(1):2719. PubMed ID: 35581222
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Structure-based prediction and characterization of photo-crosslinking in native protein-RNA complexes.
    Feng H; Lu XJ; Maji S; Liu L; Ustianenko D; Rudnick ND; Zhang C
    Nat Commun; 2024 Mar; 15(1):2279. PubMed ID: 38480694
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Single Nucleotide Resolution RNA-Protein Cross-Linking Mass Spectrometry: A Simple Extension of the CLIR-MS Workflow.
    Götze M; Sarnowski CP; de Vries T; Knörlein A; Allain FH; Hall J; Aebersold R; Leitner A
    Anal Chem; 2021 Nov; 93(44):14626-14634. PubMed ID: 34714631
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Individual Nucleotide Resolution UV Cross-Linking and Immunoprecipitation (iCLIP) to Determine Protein-RNA Interactions.
    Sibley CR
    Methods Mol Biol; 2018; 1649():427-454. PubMed ID: 29130215
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Combining Amine-Reactive Cross-Linkers and Photo-Reactive Amino Acids for 3D-Structure Analysis of Proteins and Protein Complexes.
    Lössl P; Sinz A
    Methods Mol Biol; 2016; 1394():109-127. PubMed ID: 26700045
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Extending the cross-linking/mass spectrometry strategy: Facile incorporation of photo-activatable amino acids into the model protein calmodulin in Escherichia coli cells.
    Piotrowski C; Ihling CH; Sinz A
    Methods; 2015 Nov; 89():121-7. PubMed ID: 25726908
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
    Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
    J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Pinpointing RNA-Protein Cross-Links with Site-Specific Stable Isotope-Labeled Oligonucleotides.
    Lelyveld VS; Björkbom A; Ransey EM; Sliz P; Szostak JW
    J Am Chem Soc; 2015 Dec; 137(49):15378-81. PubMed ID: 26583201
    [TBL] [Abstract][Full Text] [Related]  

  • 9.
    Sarnowski CP; Götze M; Leitner A
    J Proteome Res; 2023 Oct; 22(10):3368-3382. PubMed ID: 37669508
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.
    Kramer K; Sachsenberg T; Beckmann BM; Qamar S; Boon KL; Hentze MW; Kohlbacher O; Urlaub H
    Nat Methods; 2014 Oct; 11(10):1064-70. PubMed ID: 25173706
    [TBL] [Abstract][Full Text] [Related]  

  • 11. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
    Konig J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
    J Vis Exp; 2011 Apr; (50):. PubMed ID: 21559008
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The advancement of chemical cross-linking and mass spectrometry for structural proteomics: from single proteins to protein interaction networks.
    Sinz A
    Expert Rev Proteomics; 2014 Dec; 11(6):733-43. PubMed ID: 25227871
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Peptide mass fingerprinting using isotopically encoded photo-crosslinking amino acids.
    Wilkins BJ; Daggett KA; Cropp TA
    Mol Biosyst; 2008 Sep; 4(9):934-6. PubMed ID: 18704231
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Cross-linking and mass spectrometry as a tool for studying the structural biology of ribonucleoproteins.
    Sarnowski CP; Bikaki M; Leitner A
    Structure; 2022 Apr; 30(4):441-461. PubMed ID: 35366400
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A Modified Cross-Linking Analysis of cDNAs (CRAC ) Protocol for Detecting RNA-Protein Interactions and Transcription at Single-Nucleotide Resolution.
    Challal D; Colin J; Villa T; Libri D
    Methods Mol Biol; 2022; 2477():35-55. PubMed ID: 35524110
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reversible photo-cross-linking of the GCN4 peptide containing 3-cyanovinylcarbazole amino acid to double-stranded DNA.
    Qiu Z; Nakamura S; Fujimoto K
    Org Biomol Chem; 2019 Jun; 17(25):6277-6283. PubMed ID: 31192345
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Effects of the biological backbone on DNA-protein stacking interactions.
    Churchill CD; Navarro-Whyte L; Rutledge LR; Wetmore SD
    Phys Chem Chem Phys; 2009 Dec; 11(45):10657-70. PubMed ID: 20145810
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Quantitative Cross-Linking of Proteins and Protein Complexes.
    Barth M; Schmidt C
    Methods Mol Biol; 2021; 2228():385-400. PubMed ID: 33950504
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Probing the hydrophobic interactions in the skeletal actomyosin subfragment 1 and its nucleotide complexes by zero-length cross-linking with a nickel-peptide chelate.
    Bertrand R; Derancourt J; Kassab R
    Biochemistry; 1997 Aug; 36(32):9703-14. PubMed ID: 9245402
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Probing the interaction of T7 RNA polymerase with promoter.
    Sastry S; Ross BM
    Biochemistry; 1999 Apr; 38(16):4972-81. PubMed ID: 10213599
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.