BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

240 related articles for article (PubMed ID: 35584008)

  • 1. RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in
    Tierrafría VH; Rioualen C; Salgado H; Lara P; Gama-Castro S; Lally P; Gómez-Romero L; Peña-Loredo P; López-Almazo AG; Alarcón-Carranza G; Betancourt-Figueroa F; Alquicira-Hernández S; Polanco-Morelos JE; García-Sotelo J; Gaytan-Nuñez E; Méndez-Cruz CF; Muñiz LJ; Bonavides-Martínez C; Moreno-Hagelsieb G; Galagan JE; Wade JT; Collado-Vides J
    Microb Genom; 2022 May; 8(5):. PubMed ID: 35584008
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0.
    Santos-Zavaleta A; Sánchez-Pérez M; Salgado H; Velázquez-Ramírez DA; Gama-Castro S; Tierrafría VH; Busby SJW; Aquino P; Fang X; Palsson BO; Galagan JE; Collado-Vides J
    BMC Biol; 2018 Aug; 16(1):91. PubMed ID: 30115066
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.
    Santos-Zavaleta A; Salgado H; Gama-Castro S; Sánchez-Pérez M; Gómez-Romero L; Ledezma-Tejeida D; García-Sotelo JS; Alquicira-Hernández K; Muñiz-Rascado LJ; Peña-Loredo P; Ishida-Gutiérrez C; Velázquez-Ramírez DA; Del Moral-Chávez V; Bonavides-Martínez C; Méndez-Cruz CF; Galagan J; Collado-Vides J
    Nucleic Acids Res; 2019 Jan; 47(D1):D212-D220. PubMed ID: 30395280
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Gold Standard for Transcription Factor Regulatory Interactions in
    Lara P; Gama-Castro S; Salgado H; Rioualen C; Tierrafría VH; Muñiz-Rascado LJ; Bonavides-Martínez C; Collado-Vides J
    bioRxiv; 2023 Dec; ():. PubMed ID: 37163020
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.
    Salgado H; Gama-Castro S; Peralta-Gil M; Díaz-Peredo E; Sánchez-Solano F; Santos-Zavaleta A; Martínez-Flores I; Jiménez-Jacinto V; Bonavides-Martínez C; Segura-Salazar J; Martínez-Antonio A; Collado-Vides J
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D394-7. PubMed ID: 16381895
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RegulonDB v12.0: a comprehensive resource of transcriptional regulation in E. coli K-12.
    Salgado H; Gama-Castro S; Lara P; Mejia-Almonte C; Alarcón-Carranza G; López-Almazo AG; Betancourt-Figueroa F; Peña-Loredo P; Alquicira-Hernández S; Ledezma-Tejeida D; Arizmendi-Zagal L; Mendez-Hernandez F; Diaz-Gomez AK; Ochoa-Praxedis E; Muñiz-Rascado LJ; García-Sotelo JS; Flores-Gallegos FA; Gómez L; Bonavides-Martínez C; Del Moral-Chávez VM; Hernández-Alvarez AJ; Santos-Zavaleta A; Capella-Gutierrez S; Gelpi JL; Collado-Vides J
    Nucleic Acids Res; 2024 Jan; 52(D1):D255-D264. PubMed ID: 37971353
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
    Salgado H; Gama-Castro S; Martínez-Antonio A; Díaz-Peredo E; Sánchez-Solano F; Peralta-Gil M; Garcia-Alonso D; Jiménez-Jacinto V; Santos-Zavaleta A; Bonavides-Martínez C; Collado-Vides J
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D303-6. PubMed ID: 14681419
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Flexible gold standards for transcription factor regulatory interactions in
    Lara P; Gama-Castro S; Salgado H; Rioualen C; Tierrafría VH; Muñiz-Rascado LJ; Bonavides-Martínez C; Collado-Vides J
    Front Genet; 2024; 15():1353553. PubMed ID: 38505828
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.
    Gama-Castro S; Rinaldi F; López-Fuentes A; Balderas-Martínez YI; Clematide S; Ellendorff TR; Santos-Zavaleta A; Marques-Madeira H; Collado-Vides J
    Database (Oxford); 2014; 2014():. PubMed ID: 24903516
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
    Gama-Castro S; Salgado H; Santos-Zavaleta A; Ledezma-Tejeida D; Muñiz-Rascado L; García-Sotelo JS; Alquicira-Hernández K; Martínez-Flores I; Pannier L; Castro-Mondragón JA; Medina-Rivera A; Solano-Lira H; Bonavides-Martínez C; Pérez-Rueda E; Alquicira-Hernández S; Porrón-Sotelo L; López-Fuentes A; Hernández-Koutoucheva A; Del Moral-Chávez V; Rinaldi F; Collado-Vides J
    Nucleic Acids Res; 2016 Jan; 44(D1):D133-43. PubMed ID: 26527724
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
    Gama-Castro S; Salgado H; Peralta-Gil M; Santos-Zavaleta A; Muñiz-Rascado L; Solano-Lira H; Jimenez-Jacinto V; Weiss V; García-Sotelo JS; López-Fuentes A; Porrón-Sotelo L; Alquicira-Hernández S; Medina-Rivera A; Martínez-Flores I; Alquicira-Hernández K; Martínez-Adame R; Bonavides-Martínez C; Miranda-Ríos J; Huerta AM; Mendoza-Vargas A; Collado-Torres L; Taboada B; Vega-Alvarado L; Olvera M; Olvera L; Grande R; Morett E; Collado-Vides J
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D98-105. PubMed ID: 21051347
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
    Salgado H; Peralta-Gil M; Gama-Castro S; Santos-Zavaleta A; Muñiz-Rascado L; García-Sotelo JS; Weiss V; Solano-Lira H; Martínez-Flores I; Medina-Rivera A; Salgado-Osorio G; Alquicira-Hernández S; Alquicira-Hernández K; López-Fuentes A; Porrón-Sotelo L; Huerta AM; Bonavides-Martínez C; Balderas-Martínez YI; Pannier L; Olvera M; Labastida A; Jiménez-Jacinto V; Vega-Alvarado L; Del Moral-Chávez V; Hernández-Alvarez A; Morett E; Collado-Vides J
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D203-13. PubMed ID: 23203884
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
    Gama-Castro S; Jiménez-Jacinto V; Peralta-Gil M; Santos-Zavaleta A; Peñaloza-Spinola MI; Contreras-Moreira B; Segura-Salazar J; Muñiz-Rascado L; Martínez-Flores I; Salgado H; Bonavides-Martínez C; Abreu-Goodger C; Rodríguez-Penagos C; Miranda-Ríos J; Morett E; Merino E; Huerta AM; Treviño-Quintanilla L; Collado-Vides J
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D120-4. PubMed ID: 18158297
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Using RegulonDB, the Escherichia coli K-12 Gene Regulatory Transcriptional Network Database.
    Salgado H; Martínez-Flores I; Bustamante VH; Alquicira-Hernández K; García-Sotelo JS; García-Alonso D; Collado-Vides J
    Curr Protoc Bioinformatics; 2018 Mar; 61(1):1.32.1-1.32.30. PubMed ID: 30040192
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evidence classification of high-throughput protocols and confidence integration in RegulonDB.
    Weiss V; Medina-Rivera A; Huerta AM; Santos-Zavaleta A; Salgado H; Morett E; Collado-Vides J
    Database (Oxford); 2013; 2013():bas059. PubMed ID: 23327937
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.
    Salgado H; Santos-Zavaleta A; Gama-Castro S; Millán-Zárate D; Díaz-Peredo E; Sánchez-Solano F; Pérez-Rueda E; Bonavides-Martínez C; Collado-Vides J
    Nucleic Acids Res; 2001 Jan; 29(1):72-4. PubMed ID: 11125053
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The comprehensive updated regulatory network of Escherichia coli K-12.
    Salgado H; Santos-Zavaleta A; Gama-Castro S; Peralta-Gil M; Peñaloza-Spínola MI; Martínez-Antonio A; Karp PD; Collado-Vides J
    BMC Bioinformatics; 2006 Jan; 7():5. PubMed ID: 16398937
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli.
    Salgado H; Santos A; Garza-Ramos U; van Helden J; Díaz E; Collado-Vides J
    Nucleic Acids Res; 1999 Jan; 27(1):59-60. PubMed ID: 9847141
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.
    Salgado H; Santos-Zavaleta A; Gama-Castro S; Millán-Zárate D; Blattner FR; Collado-Vides J
    Nucleic Acids Res; 2000 Jan; 28(1):65-7. PubMed ID: 10592182
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli.
    Mendoza-Vargas A; Olvera L; Olvera M; Grande R; Vega-Alvarado L; Taboada B; Jimenez-Jacinto V; Salgado H; Juárez K; Contreras-Moreira B; Huerta AM; Collado-Vides J; Morett E
    PLoS One; 2009 Oct; 4(10):e7526. PubMed ID: 19838305
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.