BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

239 related articles for article (PubMed ID: 35584008)

  • 21. Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination.
    Cervantes-Rivera R; Tronnet S; Puhar A
    BMC Genomics; 2020 Apr; 21(1):285. PubMed ID: 32252626
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties.
    Méndez-Cruz CF; Blanchet A; Godínez A; Arroyo-Fernández I; Gama-Castro S; Martínez-Luna SB; González-Colín C; Collado-Vides J
    Database (Oxford); 2020 Dec; 2020():. PubMed ID: 33306798
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Extracting regulatory networks of Escherichia coli from RegulonDB.
    Salgado H; Martínez-Flores I; López-Fuentes A; García-Sotelo JS; Porrón-Sotelo L; Solano H; Muñiz-Rascado L; Collado-Vides J
    Methods Mol Biol; 2012; 804():179-95. PubMed ID: 22144154
    [TBL] [Abstract][Full Text] [Related]  

  • 24. RegulonDB: a database on transcriptional regulation in Escherichia coli.
    Huerta AM; Salgado H; Thieffry D; Collado-Vides J
    Nucleic Acids Res; 1998 Jan; 26(1):55-9. PubMed ID: 9399800
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks.
    Rioualen C; Charbonnier-Khamvongsa L; Collado-Vides J; van Helden J
    Curr Protoc Bioinformatics; 2019 Jun; 66(1):e72. PubMed ID: 30786165
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.
    Thieffry D; Salgado H; Huerta AM; Collado-Vides J
    Bioinformatics; 1998 Jun; 14(5):391-400. PubMed ID: 9682052
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.
    Beber ME; Muskhelishvili G; Hütt MT
    Database (Oxford); 2016; 2016():. PubMed ID: 26980514
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.
    Faith JJ; Hayete B; Thaden JT; Mogno I; Wierzbowski J; Cottarel G; Kasif S; Collins JJ; Gardner TS
    PLoS Biol; 2007 Jan; 5(1):e8. PubMed ID: 17214507
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Hierarchy of transcription factor network in Escherichia coli K-12: H-NS-mediated silencing and Anti-silencing by global regulators.
    Ishihama A; Shimada T
    FEMS Microbiol Rev; 2021 Nov; 45(6):. PubMed ID: 34196371
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Regulatory Role of PlaR (YiaJ) for Plant Utilization in Escherichia coli K-12.
    Shimada T; Yokoyama Y; Anzai T; Yamamoto K; Ishihama A
    Sci Rep; 2019 Dec; 9(1):20415. PubMed ID: 31892694
    [TBL] [Abstract][Full Text] [Related]  

  • 31. EcoCyc: a comprehensive view of Escherichia coli biology.
    Keseler IM; Bonavides-Martínez C; Collado-Vides J; Gama-Castro S; Gunsalus RP; Johnson DA; Krummenacker M; Nolan LM; Paley S; Paulsen IT; Peralta-Gil M; Santos-Zavaleta A; Shearer AG; Karp PD
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D464-70. PubMed ID: 18974181
    [TBL] [Abstract][Full Text] [Related]  

  • 32. EcoCyc: a comprehensive database of Escherichia coli biology.
    Keseler IM; Collado-Vides J; Santos-Zavaleta A; Peralta-Gil M; Gama-Castro S; Muñiz-Rascado L; Bonavides-Martinez C; Paley S; Krummenacker M; Altman T; Kaipa P; Spaulding A; Pacheco J; Latendresse M; Fulcher C; Sarker M; Shearer AG; Mackie A; Paulsen I; Gunsalus RP; Karp PD
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D583-90. PubMed ID: 21097882
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments.
    Welch R; Chung D; Grass J; Landick R; Keles S
    Nucleic Acids Res; 2017 Sep; 45(15):e145. PubMed ID: 28911122
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Expanded roles of pyruvate-sensing PdhR in transcription regulation of the
    Anzai T; Imamura S; Ishihama A; Shimada T
    Microb Genom; 2020 Oct; 6(10):. PubMed ID: 32975502
    [TBL] [Abstract][Full Text] [Related]  

  • 35. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
    Keseler IM; Mackie A; Santos-Zavaleta A; Billington R; Bonavides-Martínez C; Caspi R; Fulcher C; Gama-Castro S; Kothari A; Krummenacker M; Latendresse M; Muñiz-Rascado L; Ong Q; Paley S; Peralta-Gil M; Subhraveti P; Velázquez-Ramírez DA; Weaver D; Collado-Vides J; Paulsen I; Karp PD
    Nucleic Acids Res; 2017 Jan; 45(D1):D543-D550. PubMed ID: 27899573
    [TBL] [Abstract][Full Text] [Related]  

  • 36. EcoCyc: a comprehensive database resource for Escherichia coli.
    Keseler IM; Collado-Vides J; Gama-Castro S; Ingraham J; Paley S; Paulsen IT; Peralta-Gil M; Karp PD
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D334-7. PubMed ID: 15608210
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria.
    Díaz-Rodríguez M; Lithgow-Serrano O; Guadarrama-García F; Tierrafría VH; Gama-Castro S; Solano-Lira H; Salgado H; Rinaldi F; Méndez-Cruz CF; Collado-Vides J
    Biochim Biophys Acta Gene Regul Mech; 2021; 1864(11-12):194753. PubMed ID: 34461312
    [TBL] [Abstract][Full Text] [Related]  

  • 38. OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes.
    Chetal K; Janga SC
    Biomed Res Int; 2015; 2015():318217. PubMed ID: 26543854
    [TBL] [Abstract][Full Text] [Related]  

  • 39. dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data.
    Chung D; Park D; Myers K; Grass J; Kiley P; Landick R; Keleş S
    PLoS Comput Biol; 2013; 9(10):e1003246. PubMed ID: 24146601
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Environmental conditions and transcriptional regulation in Escherichia coli: a physiological integrative approach.
    Martínez-Antonio A; Salgado H; Gama-Castro S; Gutiérrez-Ríos RM; Jiménez-Jacinto V; Collado-Vides J
    Biotechnol Bioeng; 2003 Dec; 84(7):743-9. PubMed ID: 14708114
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.