These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 35585929)

  • 1. Metabarcoding of insect-associated fungal communities: a comparison of internal transcribed spacer (ITS) and large-subunit (LSU) rRNA markers.
    Ceballos-Escalera A; Richards J; Arias MB; Inward DJG; Vogler AP
    MycoKeys; 2022; 88():1-33. PubMed ID: 35585929
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of sequencing the D2 region of the large subunit ribosomal RNA gene (MicroSEQ®) versus the internal transcribed spacer (ITS) regions using two public databases for identification of common and uncommon clinically relevant fungal species.
    Arbefeville S; Harris A; Ferrieri P
    J Microbiol Methods; 2017 Sep; 140():40-46. PubMed ID: 28647582
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Phylogenetically Structured Differences in rRNA Gene Sequence Variation among Species of Arbuscular Mycorrhizal Fungi and Their Implications for Sequence Clustering.
    House GL; Ekanayake S; Ruan Y; Schütte UM; Kaonongbua W; Fox G; Ye Y; Bever JD
    Appl Environ Microbiol; 2016 Aug; 82(16):4921-30. PubMed ID: 27260357
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metabarcoding of fungal communities associated with bark beetles.
    Miller KE; Hopkins K; Inward DJ; Vogler AP
    Ecol Evol; 2016 Mar; 6(6):1590-600. PubMed ID: 26904186
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Understudied, underrepresented, and unknown: Methodological biases that limit detection of early diverging fungi from environmental samples.
    Reynolds NK; Jusino MA; Stajich JE; Smith ME
    Mol Ecol Resour; 2022 Apr; 22(3):1065-1085. PubMed ID: 34695878
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation.
    Vu D; Groenewald M; de Vries M; Gehrmann T; Stielow B; Eberhardt U; Al-Hatmi A; Groenewald JZ; Cardinali G; Houbraken J; Boekhout T; Crous PW; Robert V; Verkley GJM
    Stud Mycol; 2019 Mar; 92():135-154. PubMed ID: 29955203
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Geosmithia fungi are highly diverse and consistent bark beetle associates: evidence from their community structure in temperate Europe.
    Kolarík M; Kubátová A; Hulcr J; Pazoutová S
    Microb Ecol; 2008 Jan; 55(1):65-80. PubMed ID: 17940820
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis.
    Conti A; Casagrande Pierantoni D; Robert V; Corte L; Cardinali G
    Microbiol Spectr; 2023 Feb; 11(1):e0105222. PubMed ID: 36519933
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Application of Ribosomal Internal Transcribed Spacer 1, Internal Transcribed Spacer 2, and Large-Subunit D1-D2 Regions as the Genetic Markers to Identify Fungi Isolated from Different Environmental Samples: A Molecular Surveillance Study of Public Health Importance.
    Sulaiman IM; Jacobs E; Simpson S
    J AOAC Int; 2020 Jun; 103(3):843-850. PubMed ID: 33241369
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing.
    Yang RH; Su JH; Shang JJ; Wu YY; Li Y; Bao DP; Yao YJ
    PLoS One; 2018; 13(10):e0206428. PubMed ID: 30359454
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Towards Improved Detection and Identification of Rust Fungal Pathogens in Environmental Samples Using a Metabarcoding Approach.
    Chen W; Radford D; Hambleton S
    Phytopathology; 2022 Mar; 112(3):535-548. PubMed ID: 34384241
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Ciliate Environmental Diversity Can Be Underestimated by the V4 Region of SSU rDNA: Insights from Species Delimitation and Multilocus Phylogeny of
    Zhan Z; Li J; Xu K
    Microorganisms; 2019 Oct; 7(11):. PubMed ID: 31717798
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Algal and fungal diversity in Antarctic lichens.
    Park CH; Kim KM; Elvebakk A; Kim OS; Jeong G; Hong SG
    J Eukaryot Microbiol; 2015; 62(2):196-205. PubMed ID: 25105247
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene.
    Mota-Gutierrez J; Ferrocino I; Rantsiou K; Cocolin L
    Int J Food Microbiol; 2019 Feb; 290():132-140. PubMed ID: 30340111
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.
    Heeger F; Bourne EC; Baschien C; Yurkov A; Bunk B; Spröer C; Overmann J; Mazzoni CJ; Monaghan MT
    Mol Ecol Resour; 2018 Nov; 18(6):1500-1514. PubMed ID: 30106226
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Diversity measures in environmental sequences are highly dependent on alignment quality--data from ITS and new LSU primers targeting basidiomycetes.
    Krüger D; Kapturska D; Fischer C; Daniel R; Wubet T
    PLoS One; 2012; 7(2):e32139. PubMed ID: 22363808
    [TBL] [Abstract][Full Text] [Related]  

  • 17. From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition.
    Porras-Alfaro A; Liu KL; Kuske CR; Xie G
    Appl Environ Microbiol; 2014 Feb; 80(3):829-40. PubMed ID: 24242255
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes.
    Liu KL; Porras-Alfaro A; Kuske CR; Eichorst SA; Xie G
    Appl Environ Microbiol; 2012 Mar; 78(5):1523-33. PubMed ID: 22194300
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?
    Brown EA; Chain FJ; Crease TJ; MacIsaac HJ; Cristescu ME
    Ecol Evol; 2015 Jun; 5(11):2234-51. PubMed ID: 26078859
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Phylogeny and species delineation in the marine diatom Pseudo-nitzschia (Bacillariophyta) using cox1, LSU, and ITS2 rRNA genes: A perspective in character evolution.
    Lim HC; Tan SN; Teng ST; Lundholm N; Orive E; David H; Quijano-Scheggia S; Leong SCY; Wolf M; Bates SS; Lim PT; Leaw CP
    J Phycol; 2018 Apr; 54(2):234-248. PubMed ID: 29377161
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.