145 related articles for article (PubMed ID: 35622330)
1. Combined Analysis of Transcriptome and T-Cell Receptor Alpha and Beta (TRA /TRB ) Repertoire in Paucicellular Samples at the Single-Cell Level.
Litjens NHR; Langerak AW; Azmani Z; den Dekker X; Betjes MGH; Brouwer RWW; van IJcken WFJ
Methods Mol Biol; 2022; 2453():231-259. PubMed ID: 35622330
[TBL] [Abstract][Full Text] [Related]
2. Validation of a Combined Transcriptome and T Cell Receptor Alpha/Beta (TRA/TRB) Repertoire Assay at the Single Cell Level for Paucicellular Samples.
Litjens NHR; Langerak AW; van der List ACJ; Klepper M; de Bie M; Azmani Z; den Dekker AT; Brouwer RWW; Betjes MGH; Van IJcken WFJ
Front Immunol; 2020; 11():1999. PubMed ID: 33013853
[TBL] [Abstract][Full Text] [Related]
3. IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST.
Giudicelli V; Duroux P; Kossida S; Lefranc MP
BMC Immunol; 2017 Jun; 18(1):35. PubMed ID: 28651553
[TBL] [Abstract][Full Text] [Related]
4. A Comprehensive Annotation of the Channel Catfish (
Crider J; Quiniou SMA; Felch KL; Showmaker K; Bengtén E; Wilson M
Front Immunol; 2021; 12():786402. PubMed ID: 34899754
[TBL] [Abstract][Full Text] [Related]
5. A new high-throughput sequencing method for determining diversity and similarity of T cell receptor (TCR) α and β repertoires and identifying potential new invariant TCR α chains.
Kitaura K; Shini T; Matsutani T; Suzuki R
BMC Immunol; 2016 Oct; 17(1):38. PubMed ID: 27729009
[TBL] [Abstract][Full Text] [Related]
6. Single-Cell-Based High-Throughput Ig and TCR Repertoire Sequencing Analysis in Rhesus Macaques.
Walsh ES; Tollison TS; Brochu HN; Shaw BI; Diveley KR; Chou H; Law L; Kirk AD; Gale M; Peng X
J Immunol; 2022 Feb; 208(3):762-771. PubMed ID: 34987112
[TBL] [Abstract][Full Text] [Related]
7. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
Alamyar E; Duroux P; Lefranc MP; Giudicelli V
Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
[TBL] [Abstract][Full Text] [Related]
8. IMGT/HighV-QUEST Statistical Significance of IMGT Clonotype (AA) Diversity per Gene for Standardized Comparisons of Next Generation Sequencing Immunoprofiles of Immunoglobulins and T Cell Receptors.
Aouinti S; Malouche D; Giudicelli V; Kossida S; Lefranc MP
PLoS One; 2015; 10(11):e0142353. PubMed ID: 26540440
[TBL] [Abstract][Full Text] [Related]
9. Purpose-Built Immunoinformatics for BcR IG/TR Repertoire Data Analysis.
Galigalidou C; Zaragoza-Infante L; Chatzidimitriou A; Stamatopoulos K; Psomopoulos F; Agathangelidis A
Methods Mol Biol; 2022; 2453():585-603. PubMed ID: 35622343
[TBL] [Abstract][Full Text] [Related]
10. Standardized next-generation sequencing of immunoglobulin and T-cell receptor gene recombinations for MRD marker identification in acute lymphoblastic leukaemia; a EuroClonality-NGS validation study.
Brüggemann M; Kotrová M; Knecht H; Bartram J; Boudjogrha M; Bystry V; Fazio G; Froňková E; Giraud M; Grioni A; Hancock J; Herrmann D; Jiménez C; Krejci A; Moppett J; Reigl T; Salson M; Scheijen B; Schwarz M; Songia S; Svaton M; van Dongen JJM; Villarese P; Wakeman S; Wright G; Cazzaniga G; Davi F; García-Sanz R; Gonzalez D; Groenen PJTA; Hummel M; Macintyre EA; Stamatopoulos K; Pott C; Trka J; Darzentas N; Langerak AW;
Leukemia; 2019 Sep; 33(9):2241-2253. PubMed ID: 31243313
[TBL] [Abstract][Full Text] [Related]
11. Single-Cell Analysis and Tracking of Antigen-Specific T Cells: Integrating Paired Chain AIRR-Seq and Transcriptome Sequencing: A Method by the AIRR Community.
Gupta N; Lindeman I; Reinhardt S; Mariotti-Ferrandiz E; Mujangi-Ebeka K; Martins-Taylor K; Eugster A
Methods Mol Biol; 2022; 2453():379-421. PubMed ID: 35622336
[TBL] [Abstract][Full Text] [Related]
12. High-Throughput Sequencing of the T-Cell Receptor Beta Chain Gene Repertoire in Chronic Lymphocytic Leukemia.
Vlachonikola E; Vardi A; Stamatopoulos K; Hadzidimitriou A
Methods Mol Biol; 2019; 1881():355-363. PubMed ID: 30350216
[TBL] [Abstract][Full Text] [Related]
13. Serial Analysis of the T-Cell Receptor β-Chain Repertoire in People Living With HIV Reveals Incomplete Recovery After Long-Term Antiretroviral Therapy.
Towlerton AMH; Ravishankar S; Coffey DG; Puronen CE; Warren EH
Front Immunol; 2022; 13():879190. PubMed ID: 35585986
[TBL] [Abstract][Full Text] [Related]
14. tcR: an R package for T cell receptor repertoire advanced data analysis.
Nazarov VI; Pogorelyy MV; Komech EA; Zvyagin IV; Bolotin DA; Shugay M; Chudakov DM; Lebedev YB; Mamedov IZ
BMC Bioinformatics; 2015 May; 16(1):175. PubMed ID: 26017500
[TBL] [Abstract][Full Text] [Related]
15. Systematic Profiling of Full-Length Ig and TCR Repertoire Diversity in Rhesus Macaque through Long Read Transcriptome Sequencing.
Brochu HN; Tseng E; Smith E; Thomas MJ; Jones AM; Diveley KR; Law L; Hansen SG; Picker LJ; Gale M; Peng X
J Immunol; 2020 Jun; 204(12):3434-3444. PubMed ID: 32376650
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases.
Barennes P; Quiniou V; Shugay M; Egorov ES; Davydov AN; Chudakov DM; Uddin I; Ismail M; Oakes T; Chain B; Eugster A; Kashofer K; Rainer PP; Darko S; Ransier A; Douek DC; Klatzmann D; Mariotti-Ferrandiz E
Nat Biotechnol; 2021 Feb; 39(2):236-245. PubMed ID: 32895550
[TBL] [Abstract][Full Text] [Related]
17. Overview of the Germline and Expressed Repertoires of the TRB Genes in
Massari S; Bellini M; Ciccarese S; Antonacci R
Front Immunol; 2018; 9():2526. PubMed ID: 30455691
[TBL] [Abstract][Full Text] [Related]
18. The past, present, and future of immune repertoire biology - the rise of next-generation repertoire analysis.
Six A; Mariotti-Ferrandiz ME; Chaara W; Magadan S; Pham HP; Lefranc MP; Mora T; Thomas-Vaslin V; Walczak AM; Boudinot P
Front Immunol; 2013 Nov; 4():413. PubMed ID: 24348479
[TBL] [Abstract][Full Text] [Related]
19. Next-generation amplicon TRB locus sequencing can overcome limitations of flow-cytometric Vβ expression analysis and confirms clonality in all T-cell prolymphocytic leukemia cases.
Kotrova M; Novakova M; Oberbeck S; Mayer P; Schrader A; Knecht H; Hrusak O; Herling M; Brüggemann M
Cytometry A; 2018 Nov; 93(11):1118-1124. PubMed ID: 30414304
[TBL] [Abstract][Full Text] [Related]
20. T cell receptor beta germline variability is revealed by inference from repertoire data.
Omer A; Peres A; Rodriguez OL; Watson CT; Lees W; Polak P; Collins AM; Yaari G
Genome Med; 2022 Jan; 14(1):2. PubMed ID: 34991709
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
