These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

254 related articles for article (PubMed ID: 35634782)

  • 1. AlphaFold2 fails to predict protein fold switching.
    Chakravarty D; Porter LL
    Protein Sci; 2022 Jun; 31(6):e4353. PubMed ID: 35634782
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Distinguishing features of fold-switching proteins.
    Chakravarty D; Schafer JW; Porter LL
    Protein Sci; 2023 Mar; 32(3):e4596. PubMed ID: 36782353
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessing Fairness of AlphaFold2 Prediction of Protein 3D Structures.
    Abbas U; Chen J; Shao Q
    bioRxiv; 2023 May; ():. PubMed ID: 37293014
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Systematic identification of conditionally folded intrinsically disordered regions by AlphaFold2.
    Alderson TR; Pritišanac I; Kolarić Đ; Moses AM; Forman-Kay JD
    Proc Natl Acad Sci U S A; 2023 Oct; 120(44):e2304302120. PubMed ID: 37878721
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An automated pipeline integrating AlphaFold 2 and MODELLER for protein structure prediction.
    Gil Zuluaga FH; D'Arminio N; Bardozzo F; Tagliaferri R; Marabotti A
    Comput Struct Biotechnol J; 2023; 21():5620-5629. PubMed ID: 38047234
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A high-throughput predictive method for sequence-similar fold switchers.
    Kim AK; Looger LL; Porter LL
    Biopolymers; 2021 Oct; 112(10):e23416. PubMed ID: 33462801
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AlphaFold2 has more to learn about protein energy landscapes.
    Chakravarty D; Schafer JW; Chen EA; Thole JR; Porter LL
    bioRxiv; 2023 Dec; ():. PubMed ID: 38168383
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting protein flexibility with AlphaFold.
    Ma P; Li DW; Brüschweiler R
    Proteins; 2023 Jun; 91(6):847-855. PubMed ID: 36680514
    [TBL] [Abstract][Full Text] [Related]  

  • 9. AlphaFold2: A Role for Disordered Protein/Region Prediction?
    Wilson CJ; Choy WY; Karttunen M
    Int J Mol Sci; 2022 Apr; 23(9):. PubMed ID: 35562983
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inaccurate secondary structure predictions often indicate protein fold switching.
    Mishra S; Looger LL; Porter LL
    Protein Sci; 2019 Aug; 28(8):1487-1493. PubMed ID: 31148305
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Exploring AlphaFold2's Performance on Predicting Amino Acid Side-Chain Conformations and Its Utility in Crystal Structure Determination of B318L Protein.
    Zhao H; Zhang H; She Z; Gao Z; Wang Q; Geng Z; Dong Y
    Int J Mol Sci; 2023 Feb; 24(3):. PubMed ID: 36769074
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Do "Newly Born" orphan proteins resemble "Never Born" proteins? A study using three deep learning algorithms.
    Liu J; Yuan R; Shao W; Wang J; Silman I; Sussman JL
    Proteins; 2023 Aug; 91(8):1097-1115. PubMed ID: 37092778
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Evolutionary selection of proteins with two folds.
    Schafer JW; Porter LL
    bioRxiv; 2023 Jan; ():. PubMed ID: 36789442
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A sequence-based method for predicting extant fold switchers that undergo α-helix ↔ β-strand transitions.
    Mishra S; Looger LL; Porter LL
    Biopolymers; 2021 Oct; 112(10):e23471. PubMed ID: 34498740
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Improving AlphaFold predicted contacts in alpha-helical transmembrane proteins structures using structural features.
    Sawhney A; Li J; Liao L
    Res Sq; 2023 Oct; ():. PubMed ID: 37961476
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequence clustering confounds AlphaFold2.
    Schafer JW; Chakravarty D; Chen EA; Porter LL
    bioRxiv; 2024 Jan; ():. PubMed ID: 38313252
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Distance-AF: Modifying Predicted Protein Structure Models by Alphafold2 with User-Specified Distance Constraints.
    Zhang Y; Zhang Z; Kagaya Y; Terashi G; Zhao B; Xiong Y; Kihara D
    bioRxiv; 2023 Dec; ():. PubMed ID: 38106200
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Forced folding of a disordered protein accesses an alternative folding landscape.
    Moosa MM; Ferreon AC; Deniz AA
    Chemphyschem; 2015 Jan; 16(1):90-4. PubMed ID: 25345588
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Impact of protein conformational diversity on AlphaFold predictions.
    Saldaño T; Escobedo N; Marchetti J; Zea DJ; Mac Donagh J; Velez Rueda AJ; Gonik E; García Melani A; Novomisky Nechcoff J; Salas MN; Peters T; Demitroff N; Fernandez Alberti S; Palopoli N; Fornasari MS; Parisi G
    Bioinformatics; 2022 May; 38(10):2742-2748. PubMed ID: 35561203
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.