BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

209 related articles for article (PubMed ID: 35637420)

  • 1. Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.
    Deshpande AS; Ulahannan N; Pendleton M; Dai X; Ly L; Behr JM; Schwenk S; Liao W; Augello MA; Tyer C; Rughani P; Kudman S; Tian H; Otis HG; Adney E; Wilkes D; Mosquera JM; Barbieri CE; Melnick A; Stoddart D; Turner DJ; Juul S; Harrington E; Imieliński M
    Nat Biotechnol; 2022 Oct; 40(10):1488-1499. PubMed ID: 35637420
    [TBL] [Abstract][Full Text] [Related]  

  • 2. scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order chromatin structures within individual cells.
    Li W; Lu J; Lu P; Gao Y; Bai Y; Chen K; Su X; Li M; Liu J; Chen Y; Wen L; Tang F
    Nat Methods; 2023 Oct; 20(10):1493-1505. PubMed ID: 37640936
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identifying multi-locus chromatin contacts in human cells using tethered multiple 3C.
    Ay F; Vu TH; Zeitz MJ; Varoquaux N; Carette JE; Vert JP; Hoffman AR; Noble WS
    BMC Genomics; 2015 Feb; 16(1):121. PubMed ID: 25887659
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Epstein-Barr Virus Episome Physically Interacts with Active Regions of the Host Genome in Lymphoblastoid Cells.
    Wang L; Laing J; Yan B; Zhou H; Ke L; Wang C; Narita Y; Zhang Z; Olson MR; Afzali B; Zhao B; Kazemian M
    J Virol; 2020 Nov; 94(24):. PubMed ID: 32999023
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Cell-type specialization is encoded by specific chromatin topologies.
    Winick-Ng W; Kukalev A; Harabula I; Zea-Redondo L; Szabó D; Meijer M; Serebreni L; Zhang Y; Bianco S; Chiariello AM; Irastorza-Azcarate I; Thieme CJ; Sparks TM; Carvalho S; Fiorillo L; Musella F; Irani E; Torlai Triglia E; Kolodziejczyk AA; Abentung A; Apostolova G; Paul EJ; Franke V; Kempfer R; Akalin A; Teichmann SA; Dechant G; Ungless MA; Nicodemi M; Welch L; Castelo-Branco G; Pombo A
    Nature; 2021 Nov; 599(7886):684-691. PubMed ID: 34789882
    [TBL] [Abstract][Full Text] [Related]  

  • 6. 5C analysis of the Epidermal Differentiation Complex locus reveals distinct chromatin interaction networks between gene-rich and gene-poor TADs in skin epithelial cells.
    Poterlowicz K; Yarker JL; Malashchuk I; Lajoie BR; Mardaryev AN; Gdula MR; Sharov AA; Kohwi-Shigematsu T; Botchkarev VA; Fessing MY
    PLoS Genet; 2017 Sep; 13(9):e1006966. PubMed ID: 28863138
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Practical Analysis of Genome Contact Interaction Experiments.
    Carty MA; Elemento O
    Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
    [TBL] [Abstract][Full Text] [Related]  

  • 8. 3D disorganization and rearrangement of genome provide insights into pathogenesis of NAFLD by integrated Hi-C, Nanopore, and RNA sequencing.
    Xu L; Yin L; Qi Y; Tan X; Gao M; Peng J
    Acta Pharm Sin B; 2021 Oct; 11(10):3150-3164. PubMed ID: 34729306
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Does multi-way, long-range chromatin contact data advance 3D genome reconstruction?
    Olshen AB; Segal MR
    BMC Bioinformatics; 2023 Feb; 24(1):64. PubMed ID: 36829114
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies.
    Vermeulen C; Allahyar A; Bouwman BAM; Krijger PHL; Verstegen MJAM; Geeven G; Valdes-Quezada C; Renkens I; Straver R; Kloosterman WP; de Ridder J; de Laat W
    Nat Protoc; 2020 Feb; 15(2):364-397. PubMed ID: 31932773
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity.
    Pancaldi V; Carrillo-de-Santa-Pau E; Javierre BM; Juan D; Fraser P; Spivakov M; Valencia A; Rico D
    Genome Biol; 2016 Jul; 17(1):152. PubMed ID: 27391817
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts.
    Ay F; Bailey TL; Noble WS
    Genome Res; 2014 Jun; 24(6):999-1011. PubMed ID: 24501021
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.
    Nurick I; Shamir R; Elkon R
    Epigenetics Chromatin; 2018 Aug; 11(1):49. PubMed ID: 30157915
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deciphering multi-way interactions in the human genome.
    Dotson GA; Chen C; Lindsly S; Cicalo A; Dilworth S; Ryan C; Jeyarajan S; Meixner W; Stansbury C; Pickard J; Beckloff N; Surana A; Wicha M; Muir LA; Rajapakse I
    Nat Commun; 2022 Sep; 13(1):5498. PubMed ID: 36127324
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Common DNA sequence variation influences 3-dimensional conformation of the human genome.
    Gorkin DU; Qiu Y; Hu M; Fletez-Brant K; Liu T; Schmitt AD; Noor A; Chiou J; Gaulton KJ; Sebat J; Li Y; Hansen KD; Ren B
    Genome Biol; 2019 Nov; 20(1):255. PubMed ID: 31779666
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ProbC: joint modeling of epigenome and transcriptome effects in 3D genome.
    Sefer E
    BMC Genomics; 2022 Apr; 23(1):287. PubMed ID: 35397520
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing.
    Bliznina A; Masunaga A; Mansfield MJ; Tan Y; Liu AW; West C; Rustagi T; Chien HC; Kumar S; Pichon J; Plessy C; Luscombe NM
    BMC Genomics; 2021 Mar; 22(1):222. PubMed ID: 33781200
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Regulatory chromatin landscape in
    Tannenbaum M; Sarusi-Portuguez A; Krispil R; Schwartz M; Loza O; Benichou JIC; Mosquna A; Hakim O
    Plant Methods; 2018; 14():113. PubMed ID: 30598689
    [TBL] [Abstract][Full Text] [Related]  

  • 19. High-throughput Pore-C reveals the single-allele topology and cell type-specificity of 3D genome folding.
    Zhong JY; Niu L; Lin ZB; Bai X; Chen Y; Luo F; Hou C; Xiao CL
    Nat Commun; 2023 Mar; 14(1):1250. PubMed ID: 36878904
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detection of Allele-Specific 3D Chromatin Interactions Using High-Resolution In-Nucleus 4C-seq.
    Miranda M; Noordermeer D; Moindrot B
    Methods Mol Biol; 2022; 2532():15-33. PubMed ID: 35867243
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.