These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

239 related articles for article (PubMed ID: 35639499)

  • 21. DTFLOW: Inference and Visualization of Single-cell Pseudotime Trajectory Using Diffusion Propagation.
    Wei J; Zhou T; Zhang X; Tian T
    Genomics Proteomics Bioinformatics; 2021 Apr; 19(2):306-318. PubMed ID: 33662626
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Cellular proliferation biases clonal lineage tracing and trajectory inference.
    Bonham-Carter B; Schiebinger G
    Bioinformatics; 2024 Aug; 40(8):. PubMed ID: 39102821
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Creating Lineage Trajectory Maps Via Integration of Single-Cell RNA-Sequencing and Lineage Tracing: Integrating transgenic lineage tracing and single-cell RNA-sequencing is a robust approach for mapping developmental lineage trajectories and cell fate changes.
    Fletcher RB; Das D; Ngai J
    Bioessays; 2018 Aug; 40(8):e1800056. PubMed ID: 29944188
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics.
    Street K; Risso D; Fletcher RB; Das D; Ngai J; Yosef N; Purdom E; Dudoit S
    BMC Genomics; 2018 Jun; 19(1):477. PubMed ID: 29914354
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut.
    Herring CA; Banerjee A; McKinley ET; Simmons AJ; Ping J; Roland JT; Franklin JL; Liu Q; Gerdes MJ; Coffey RJ; Lau KS
    Cell Syst; 2018 Jan; 6(1):37-51.e9. PubMed ID: 29153838
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Lineage tracing on transcriptional landscapes links state to fate during differentiation.
    Weinreb C; Rodriguez-Fraticelli A; Camargo FD; Klein AM
    Science; 2020 Feb; 367(6479):. PubMed ID: 31974159
    [TBL] [Abstract][Full Text] [Related]  

  • 27. scGET: Predicting Cell Fate Transition During Early Embryonic Development by Single-cell Graph Entropy.
    Zhong J; Han C; Zhang X; Chen P; Liu R
    Genomics Proteomics Bioinformatics; 2021 Jun; 19(3):461-474. PubMed ID: 34954425
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Trajectory inference across multiple conditions with condiments.
    Roux de Bézieux H; Van den Berge K; Street K; Dudoit S
    Nat Commun; 2024 Jan; 15(1):833. PubMed ID: 38280860
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Dynamic inference of cell developmental complex energy landscape from time series single-cell transcriptomic data.
    Jiang Q; Zhang S; Wan L
    PLoS Comput Biol; 2022 Jan; 18(1):e1009821. PubMed ID: 35073331
    [TBL] [Abstract][Full Text] [Related]  

  • 30. scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data.
    Smolander J; Junttila S; Venäläinen MS; Elo LL
    Bioinformatics; 2022 Feb; 38(5):1328-1335. PubMed ID: 34888622
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Characterization of cell fate probabilities in single-cell data with Palantir.
    Setty M; Kiseliovas V; Levine J; Gayoso A; Mazutis L; Pe'er D
    Nat Biotechnol; 2019 Apr; 37(4):451-460. PubMed ID: 30899105
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Guide to Trajectory Inference and RNA Velocity.
    Weiler P; Van den Berge K; Street K; Tiberi S
    Methods Mol Biol; 2023; 2584():269-292. PubMed ID: 36495456
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Learning deep features and topological structure of cells for clustering of scRNA-sequencing data.
    Wang H; Ma X
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35302164
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Cell lineage inference from SNP and scRNA-Seq data.
    Ding J; Lin C; Bar-Joseph Z
    Nucleic Acids Res; 2019 Jun; 47(10):e56. PubMed ID: 30820578
    [TBL] [Abstract][Full Text] [Related]  

  • 35. DELVE: feature selection for preserving biological trajectories in single-cell data.
    Ranek JS; Stallaert W; Milner JJ; Redick M; Wolff SC; Beltran AS; Stanley N; Purvis JE
    Nat Commun; 2024 Mar; 15(1):2765. PubMed ID: 38553455
    [TBL] [Abstract][Full Text] [Related]  

  • 36. DeepVelo: deep learning extends RNA velocity to multi-lineage systems with cell-specific kinetics.
    Cui H; Maan H; Vladoiu MC; Zhang J; Taylor MD; Wang B
    Genome Biol; 2024 Jan; 25(1):27. PubMed ID: 38243313
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A topology-preserving dimensionality reduction method for single-cell RNA-seq data using graph autoencoder.
    Luo Z; Xu C; Zhang Z; Jin W
    Sci Rep; 2021 Oct; 11(1):20028. PubMed ID: 34625592
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Single-cell Transcriptome Profiling reveals Dermal and Epithelial cell fate decisions during Embryonic Hair Follicle Development.
    Ge W; Tan SJ; Wang SH; Li L; Sun XF; Shen W; Wang X
    Theranostics; 2020; 10(17):7581-7598. PubMed ID: 32685006
    [TBL] [Abstract][Full Text] [Related]  

  • 39. scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data.
    Zheng X; Huang Y; Zou X
    PLoS Comput Biol; 2020 Jul; 16(7):e1007471. PubMed ID: 32716923
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis.
    Athanasiadis EI; Botthof JG; Andres H; Ferreira L; Lio P; Cvejic A
    Nat Commun; 2017 Dec; 8(1):2045. PubMed ID: 29229905
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.