117 related articles for article (PubMed ID: 35639508)
1. EPIXplorer: A web server for prediction, analysis and visualization of enhancer-promoter interactions.
Tang L; Zhong Z; Lin Y; Yang Y; Wang J; Martin JF; Li M
Nucleic Acids Res; 2022 Jul; 50(W1):W290-W297. PubMed ID: 35639508
[TBL] [Abstract][Full Text] [Related]
2. Bridging between Mouse and Human Enhancer-Promoter Long-Range Interactions in Neural Stem Cells, to Understand Enhancer Function in Neurodevelopmental Disease.
D'Aurizio R; Catona O; Pitasi M; Li YE; Ren B; Nicolis SK
Int J Mol Sci; 2022 Jul; 23(14):. PubMed ID: 35887306
[TBL] [Abstract][Full Text] [Related]
3. CNVannotator: a comprehensive annotation server for copy number variation in the human genome.
Zhao M; Zhao Z
PLoS One; 2013; 8(11):e80170. PubMed ID: 24244640
[TBL] [Abstract][Full Text] [Related]
4. Delta.EPI: a probabilistic voting-based enhancer-promoter interaction prediction platform.
Zhang Y; Wang H; Liu J; Li J; Zhang Q; Tang B; Zhang Z
J Genet Genomics; 2023 Jul; 50(7):519-527. PubMed ID: 36822264
[TBL] [Abstract][Full Text] [Related]
5. iPromoter-Seqvec: identifying promoters using bidirectional long short-term memory and sequence-embedded features.
Nguyen-Vo TH; Trinh QH; Nguyen L; Nguyen-Hoang PU; Rahardja S; Nguyen BP
BMC Genomics; 2022 Oct; 23(Suppl 5):681. PubMed ID: 36192696
[TBL] [Abstract][Full Text] [Related]
6. Integrating distal and proximal information to predict gene expression via a densely connected convolutional neural network.
Zeng W; Wang Y; Jiang R
Bioinformatics; 2020 Jan; 36(2):496-503. PubMed ID: 31318408
[TBL] [Abstract][Full Text] [Related]
7. Exploiting sequence-based features for predicting enhancer-promoter interactions.
Yang Y; Zhang R; Singh S; Ma J
Bioinformatics; 2017 Jul; 33(14):i252-i260. PubMed ID: 28881991
[TBL] [Abstract][Full Text] [Related]
8. The DOMINO web-server for active module identification analysis.
Levi H; Rahmanian N; Elkon R; Shamir R
Bioinformatics; 2022 Apr; 38(8):2364-2366. PubMed ID: 35139202
[TBL] [Abstract][Full Text] [Related]
9. On the identification of potential regulatory variants within genome wide association candidate SNP sets.
Chen CY; Chang IS; Hsiung CA; Wasserman WW
BMC Med Genomics; 2014 Jun; 7():34. PubMed ID: 24920305
[TBL] [Abstract][Full Text] [Related]
10. In the loop: promoter-enhancer interactions and bioinformatics.
Mora A; Sandve GK; Gabrielsen OS; Eskeland R
Brief Bioinform; 2016 Nov; 17(6):980-995. PubMed ID: 26586731
[TBL] [Abstract][Full Text] [Related]
11. QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.
Thibodeau A; Márquez EJ; Luo O; Ruan Y; Menghi F; Shin DG; Stitzel ML; Vera-Licona P; Ucar D
PLoS Comput Biol; 2016 Jun; 12(6):e1004809. PubMed ID: 27336171
[TBL] [Abstract][Full Text] [Related]
12. Three-dimensional genome architectural CCCTC-binding factor makes choice in duplicated enhancers at Pcdhα locus.
Wu Y; Jia Z; Ge X; Wu Q
Sci China Life Sci; 2020 Jun; 63(6):835-844. PubMed ID: 32249388
[TBL] [Abstract][Full Text] [Related]
13. iTAR: a web server for identifying target genes of transcription factors using ChIP-seq or ChIP-chip data.
Yang CC; Andrews EH; Chen MH; Wang WY; Chen JJ; Gerstein M; Liu CC; Cheng C
BMC Genomics; 2016 Aug; 17(1):632. PubMed ID: 27519564
[TBL] [Abstract][Full Text] [Related]
14. Operon Finder: A Deep Learning-based Web Server for Accurate Prediction of Prokaryotic Operons.
Tomar TS; Dasgupta P; Kanaujia SP
J Mol Biol; 2023 Jul; 435(14):167921. PubMed ID: 37356898
[TBL] [Abstract][Full Text] [Related]
15. Hooked Up from a Distance: Charting Genome-Wide Long-Range Interaction Maps in Neural Cells Chromatin to Identify Novel Candidate Genes for Neurodevelopmental Disorders.
Mercurio S; Pozzolini G; Baldi R; Barilà SE; Pitasi M; Catona O; D'Aurizio R; Nicolis SK
Int J Mol Sci; 2023 Jan; 24(2):. PubMed ID: 36674677
[TBL] [Abstract][Full Text] [Related]
16. Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model.
Tang L; Hill MC; Wang J; Wang J; Martin JF; Li M
Genome Res; 2020 Dec; 30(12):1835-1845. PubMed ID: 33184104
[TBL] [Abstract][Full Text] [Related]
17. Assessment of 3D Interactions Between Promoters and Distal Regulatory Elements with Promoter Capture Hi-C (PCHi-C).
Karasu N; Sexton T
Methods Mol Biol; 2021; 2351():229-248. PubMed ID: 34382193
[TBL] [Abstract][Full Text] [Related]
18. EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.
He Y; Wang T
Bioinformatics; 2017 Oct; 33(20):3268-3275. PubMed ID: 28605501
[TBL] [Abstract][Full Text] [Related]
19. From association to mechanism in complex disease genetics: the role of the 3D genome.
Fu Y; Tessneer KL; Li C; Gaffney PM
Arthritis Res Ther; 2018 Sep; 20(1):216. PubMed ID: 30268153
[TBL] [Abstract][Full Text] [Related]
20. Gamma-globin gene promoter elements required for interaction with globin enhancers.
Langdon SD; Kaufman RE
Blood; 1998 Jan; 91(1):309-18. PubMed ID: 9414299
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
