112 related articles for article (PubMed ID: 35649487)
1. Unattained geometric configurations of secondary structure elements in protein structural space.
Sykes J; Holland B; Charleston M
J Struct Biol; 2022 Sep; 214(3):107870. PubMed ID: 35649487
[TBL] [Abstract][Full Text] [Related]
2. SS3D-P2: a three dimensional substructure search program for protein motifs based on secondary structure elements.
Kato H; Takahashi Y
Comput Appl Biosci; 1997 Dec; 13(6):593-600. PubMed ID: 9475987
[TBL] [Abstract][Full Text] [Related]
3. Identification of local variations within secondary structures of proteins.
Kumar P; Bansal M
Acta Crystallogr D Biol Crystallogr; 2015 May; 71(Pt 5):1077-86. PubMed ID: 25945573
[TBL] [Abstract][Full Text] [Related]
4. PALSSE: a program to delineate linear secondary structural elements from protein structures.
Majumdar I; Krishna SS; Grishin NV
BMC Bioinformatics; 2005 Aug; 6():202. PubMed ID: 16095538
[TBL] [Abstract][Full Text] [Related]
5. A comparison between internal protein nanoenvironments of α-helices and β-sheets.
Mazoni I; Salim JA; de Moraes FR; Borro L; Neshich G
PLoS One; 2020; 15(12):e0244315. PubMed ID: 33378364
[TBL] [Abstract][Full Text] [Related]
6. A New Secondary Structure Assignment Algorithm Using Cα Backbone Fragments.
Cao C; Wang G; Liu A; Xu S; Wang L; Zou S
Int J Mol Sci; 2016 Mar; 17(3):333. PubMed ID: 26978354
[TBL] [Abstract][Full Text] [Related]
7. Compact Structure Patterns in Proteins.
Chitturi B; Shi S; Kinch LN; Grishin NV
J Mol Biol; 2016 Oct; 428(21):4392-4412. PubMed ID: 27498165
[TBL] [Abstract][Full Text] [Related]
8. ISSEC: inferring contacts among protein secondary structure elements using deep object detection.
Zhang Q; Zhu J; Ju F; Kong L; Sun S; Zheng WM; Bu D
BMC Bioinformatics; 2020 Nov; 21(1):503. PubMed ID: 33153432
[TBL] [Abstract][Full Text] [Related]
9. Analysis of conservation and substitutions of secondary structure elements within protein superfamilies.
Mizuguchi K; Blundell T
Bioinformatics; 2000 Dec; 16(12):1111-9. PubMed ID: 11159330
[TBL] [Abstract][Full Text] [Related]
10. Automated Family-Wide Annotation of Secondary Structure Elements.
Midlik A; Hutařová Vařeková I; Hutař J; Moturu TR; Navrátilová V; Koča J; Berka K; Svobodová Vařeková R
Methods Mol Biol; 2019; 1958():47-71. PubMed ID: 30945213
[TBL] [Abstract][Full Text] [Related]
11. How a spatial arrangement of secondary structure elements is dispersed in the universe of protein folds.
Minami S; Sawada K; Chikenji G
PLoS One; 2014; 9(9):e107959. PubMed ID: 25243952
[TBL] [Abstract][Full Text] [Related]
12. Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.
Martin J; Letellier G; Marin A; Taly JF; de Brevern AG; Gibrat JF
BMC Struct Biol; 2005 Sep; 5():17. PubMed ID: 16164759
[TBL] [Abstract][Full Text] [Related]
13. Protein secondary structure assignment using pc-polyline and convolutional neural network.
Wang L; Cao C; Zuo S
Proteins; 2021 Mar; ():. PubMed ID: 33780034
[TBL] [Abstract][Full Text] [Related]
14. Mining overrepresented 3D patterns of secondary structures in proteins.
Comin M; Guerra C; Zanotti G
J Bioinform Comput Biol; 2008 Dec; 6(6):1067-87. PubMed ID: 19090018
[TBL] [Abstract][Full Text] [Related]
15. Mining super-secondary structure motifs from 3d protein structures: a sequence order independent approach.
Aung Z; Li J
Genome Inform; 2007; 19():15-26. PubMed ID: 18546501
[TBL] [Abstract][Full Text] [Related]
16. Secondary structure assignment that accurately reflects physical and evolutionary characteristics.
Cubellis MV; Cailliez F; Lovell SC
BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S8. PubMed ID: 16351757
[TBL] [Abstract][Full Text] [Related]
17. Bridging the information gap: computational tools for intermediate resolution structure interpretation.
Jiang W; Baker ML; Ludtke SJ; Chiu W
J Mol Biol; 2001 May; 308(5):1033-44. PubMed ID: 11352589
[TBL] [Abstract][Full Text] [Related]
18. Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner.
Gutiérrez FI; Rodriguez-Valenzuela F; Ibarra IL; Devos DP; Melo F
BMC Bioinformatics; 2016 Jan; 17():20. PubMed ID: 26732380
[TBL] [Abstract][Full Text] [Related]
19. Fold recognition and accurate sequence-structure alignment of sequences directing beta-sheet proteins.
McDonnell AV; Menke M; Palmer N; King J; Cowen L; Berger B
Proteins; 2006 Jun; 63(4):976-85. PubMed ID: 16547930
[TBL] [Abstract][Full Text] [Related]
20. SABA (secondary structure assignment program based on only alpha carbons): a novel pseudo center geometrical criterion for accurate assignment of protein secondary structures.
Park SY; Yoo MJ; Shin J; Cho KH
BMB Rep; 2011 Feb; 44(2):118-22. PubMed ID: 21345311
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]