BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 35657709)

  • 1. Experimental and Analytical Approaches for Improving the Resolution of Randomly Barcoded Transposon Insertion Sequencing (RB-TnSeq) Studies.
    Borchert AJ; Bleem A; Beckham GT
    ACS Synth Biol; 2022 Jun; 11(6):2015-2021. PubMed ID: 35657709
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in
    Borchert AJ; Bleem AC; Lim HG; Rychel K; Dooley KD; Kellermyer ZA; Hodges TL; Palsson BO; Beckham GT
    mSystems; 2024 Mar; 9(3):e0094223. PubMed ID: 38323821
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.
    Wetmore KM; Price MN; Waters RJ; Lamson JS; He J; Hoover CA; Blow MJ; Bristow J; Butland G; Arkin AP; Deutschbauer A
    mBio; 2015 May; 6(3):e00306-15. PubMed ID: 25968644
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RB-TnSeq identifies genetic targets for improved tolerance of Pseudomonas putida towards compounds relevant to lignin conversion.
    Borchert AJ; Bleem A; Beckham GT
    Metab Eng; 2023 May; 77():208-218. PubMed ID: 37059293
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multiplexed fitness profiling by RB-TnSeq elucidates pathways for lignin-related aromatic catabolism in Sphingobium sp. SYK-6.
    Bleem A; Kato R; Kellermyer ZA; Katahira R; Miyamoto M; Niinuma K; Kamimura N; Masai E; Beckham GT
    Cell Rep; 2023 Aug; 42(8):112847. PubMed ID: 37515767
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in
    Thompson MG; Blake-Hedges JM; Cruz-Morales P; Barajas JF; Curran SC; Eiben CB; Harris NC; Benites VT; Gin JW; Sharpless WA; Twigg FF; Skyrud W; Krishna RN; Pereira JH; Baidoo EEK; Petzold CJ; Adams PD; Arkin AP; Deutschbauer AM; Keasling JD
    mBio; 2019 May; 10(3):. PubMed ID: 31064836
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets.
    Choudhery S; Brown AJ; Akusobi C; Rubin EJ; Sassetti CM; Ioerger TR
    mSystems; 2021 Oct; 6(5):e0087621. PubMed ID: 34665010
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a
    Alkam D; Wongsurawat T; Nookaew I; Richardson AR; Ussery D; Smeltzer MS; Jenjaroenpun P
    Microb Genom; 2021 Oct; 7(10):. PubMed ID: 34596508
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analysis of Gene Essentiality from TnSeq Data Using Transit.
    Ioerger TR
    Methods Mol Biol; 2022; 2377():391-421. PubMed ID: 34709629
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing.
    Thompson MG; Incha MR; Pearson AN; Schmidt M; Sharpless WA; Eiben CB; Cruz-Morales P; Blake-Hedges JM; Liu Y; Adams CA; Haushalter RW; Krishna RN; Lichtner P; Blank LM; Mukhopadhyay A; Deutschbauer AM; Shih PM; Keasling JD
    Appl Environ Microbiol; 2020 Oct; 86(21):. PubMed ID: 32826213
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Class II transposon-borne structure harboring metallo-beta-lactamase gene blaVIM-2 in Pseudomonas putida.
    Poirel L; Cabanne L; Collet L; Nordmann P
    Antimicrob Agents Chemother; 2006 Aug; 50(8):2889-91. PubMed ID: 16870796
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Target site selection of Pseudomonas putida transposon Tn4652.
    Kivistik PA; Kivisaar M; Hõrak R
    J Bacteriol; 2007 May; 189(10):3918-21. PubMed ID: 17351034
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Use of TnSeq to Identify Essential Alphaproteobacterial Genes Reveals Operational Variability in Conserved Developmental and Cell Cycle Systems.
    Sharma G; Curtis PD
    Methods Mol Biol; 2022; 2377():259-271. PubMed ID: 34709621
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Engineering Pseudomonas putida for efficient aromatic conversion to bioproduct using high throughput screening in a bioreactor.
    Eng T; Banerjee D; Lau AK; Bowden E; Herbert RA; Trinh J; Prahl JP; Deutschbauer A; Tanjore D; Mukhopadhyay A
    Metab Eng; 2021 Jul; 66():229-238. PubMed ID: 33964456
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genome-Wide Transposon Mutagenesis in Mycobacterium tuberculosis and Mycobacterium smegmatis.
    Majumdar G; Mbau R; Singh V; Warner DF; Dragset MS; Mukherjee R
    Methods Mol Biol; 2017; 1498():321-335. PubMed ID: 27709585
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Streamlining of a Pseudomonas putida genome using a combinatorial deletion method based on minitransposon insertion and the Flp-FRT recombination system.
    Leprince A; Janus D; de Lorenzo V; Santos VM
    Methods Mol Biol; 2012; 813():249-66. PubMed ID: 22083747
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing.
    Schmidt M; Pearson AN; Incha MR; Thompson MG; Baidoo EEK; Kakumanu R; Mukhopadhyay A; Shih PM; Deutschbauer AM; Blank LM; Keasling JD
    Appl Environ Microbiol; 2022 Apr; 88(7):e0243021. PubMed ID: 35285712
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-Wide Identification of Tomato Xylem Sap Fitness Factors for Three Plant-Pathogenic
    Georgoulis SJ; Shalvarjian KE; Helmann TC; Hamilton CD; Carlson HK; Deutschbauer AM; Lowe-Power TM
    mSystems; 2021 Dec; 6(6):e0122921. PubMed ID: 34726495
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Transposon insertion site sequencing (TIS) of Pseudomonas aeruginosa.
    Cho H
    J Microbiol; 2021 Dec; 59(12):1067-1074. PubMed ID: 34865196
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TnseqDiff: identification of conditionally essential genes in transposon sequencing studies.
    Zhao L; Anderson MT; Wu W; T Mobley HL; Bachman MA
    BMC Bioinformatics; 2017 Jul; 18(1):326. PubMed ID: 28683752
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.