These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 35662465)

  • 1. FTMove: A Web Server for Detection and Analysis of Cryptic and Allosteric Binding Sites by Mapping Multiple Protein Structures.
    Egbert M; Jones G; Collins MR; Kozakov D; Vajda S
    J Mol Biol; 2022 Jun; 434(11):167587. PubMed ID: 35662465
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins.
    Kozakov D; Grove LE; Hall DR; Bohnuud T; Mottarella SE; Luo L; Xia B; Beglov D; Vajda S
    Nat Protoc; 2015 May; 10(5):733-55. PubMed ID: 25855957
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conservation of Allosteric Ligand Binding Sites in G-Protein Coupled Receptors.
    Wakefield AE; Bajusz D; Kozakov D; Keserű GM; Vajda S
    J Chem Inf Model; 2022 Oct; 62(20):4937-4954. PubMed ID: 36195573
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites.
    Khan O; Jones G; Lazou M; Joseph-McCarthy D; Kozakov D; Beglov D; Vajda S
    J Chem Inf Model; 2024 Mar; 64(6):2084-2100. PubMed ID: 38456842
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NRIMD, a Web Server for Analyzing Protein Allosteric Interactions Based on Molecular Dynamics Simulation.
    He Y; Wang S; Zeng S; Zhu J; Xu D; Han W; Wang J
    J Chem Inf Model; 2024 Oct; 64(19):7176-7183. PubMed ID: 38991149
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.
    Xu Y; Wang S; Hu Q; Gao S; Ma X; Zhang W; Shen Y; Chen F; Lai L; Pei J
    Nucleic Acids Res; 2018 Jul; 46(W1):W374-W379. PubMed ID: 29750256
    [TBL] [Abstract][Full Text] [Related]  

  • 7. FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots.
    Grove LE; Hall DR; Beglov D; Vajda S; Kozakov D
    Bioinformatics; 2013 May; 29(9):1218-9. PubMed ID: 23476022
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FTMAP: extended protein mapping with user-selected probe molecules.
    Ngan CH; Bohnuud T; Mottarella SE; Beglov D; Villar EA; Hall DR; Kozakov D; Vajda S
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W271-5. PubMed ID: 22589414
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques.
    Brenke R; Kozakov D; Chuang GY; Beglov D; Hall D; Landon MR; Mattos C; Vajda S
    Bioinformatics; 2009 Mar; 25(5):621-7. PubMed ID: 19176554
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
    Konc J; Janežič D
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W215-20. PubMed ID: 24861616
    [TBL] [Abstract][Full Text] [Related]  

  • 11. webPDBinder: a server for the identification of ligand binding sites on protein structures.
    Bianchi V; Mangone I; Ferrè F; Helmer-Citterich M; Ausiello G
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W308-13. PubMed ID: 23737450
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SPACER: Server for predicting allosteric communication and effects of regulation.
    Goncearenco A; Mitternacht S; Yong T; Eisenhaber B; Eisenhaber F; Berezovsky IN
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W266-72. PubMed ID: 23737445
    [TBL] [Abstract][Full Text] [Related]  

  • 13. pocketZebra: a web-server for automated selection and classification of subfamily-specific binding sites by bioinformatic analysis of diverse protein families.
    Suplatov D; Kirilin E; Arbatsky M; Takhaveev V; Svedas V
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W344-9. PubMed ID: 24852248
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The visualCMAT: A web-server to select and interpret correlated mutations/co-evolving residues in protein families.
    Suplatov D; Sharapova Y; Timonina D; Kopylov K; Švedas V
    J Bioinform Comput Biol; 2018 Apr; 16(2):1840005. PubMed ID: 29361894
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins.
    Konc J; Janezic D
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W214-21. PubMed ID: 22600737
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phosfinder: a web server for the identification of phosphate-binding sites on protein structures.
    Parca L; Mangone I; Gherardini PF; Ausiello G; Helmer-Citterich M
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W278-82. PubMed ID: 21622655
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting allosteric pockets in protein biological assemblages.
    Kumar A; Kaynak BT; Dorman KS; Doruker P; Jernigan RL
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37115636
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins.
    Tan KP; Varadarajan R; Madhusudhan MS
    Nucleic Acids Res; 2011 Jul; 39(Web Server issue):W242-8. PubMed ID: 21576233
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Analysis of protein binding sites by computational solvent mapping.
    Hall DR; Kozakov D; Vajda S
    Methods Mol Biol; 2012; 819():13-27. PubMed ID: 22183527
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GenProBiS: web server for mapping of sequence variants to protein binding sites.
    Konc J; Skrlj B; Erzen N; Kunej T; Janezic D
    Nucleic Acids Res; 2017 Jul; 45(W1):W253-W259. PubMed ID: 28498966
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.