These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

141 related articles for article (PubMed ID: 35663029)

  • 1. Sequence-based pangenomic core detection.
    Schulz T; Wittler R; Stoye J
    iScience; 2022 Jun; 25(6):104413. PubMed ID: 35663029
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detecting high-scoring local alignments in pangenome graphs.
    Schulz T; Wittler R; Rahmann S; Hach F; Stoye J
    Bioinformatics; 2021 Aug; 37(16):2266-2274. PubMed ID: 33532821
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Methods for Pangenomic Core Detection.
    Schulz T; Parmigiani L; Rempel A; Stoye J
    Methods Mol Biol; 2024; 2802():73-106. PubMed ID: 38819557
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.
    Holley G; Wittler R; Stoye J
    Algorithms Mol Biol; 2016; 11():3. PubMed ID: 27087830
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
    Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V
    BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
    Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
    BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
    [TBL] [Abstract][Full Text] [Related]  

  • 7. deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph.
    Guo H; Fu Y; Gao Y; Li J; Wang Y; Liu B
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(6):2157-2166. PubMed ID: 31056509
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A space and time-efficient index for the compacted colored de Bruijn graph.
    Almodaresi F; Sarkar H; Srivastava A; Patro R
    Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
    [TBL] [Abstract][Full Text] [Related]  

  • 9. deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encoding.
    Liu B; Zhu D; Wang Y
    Bioinformatics; 2016 Jun; 32(12):i174-i182. PubMed ID: 27307614
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Inference of viral quasispecies with a paired de Bruijn graph.
    Freire B; Ladra S; Paramá JR; Salmela L
    Bioinformatics; 2021 May; 37(4):473-481. PubMed ID: 32926162
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Aligning optical maps to de Bruijn graphs.
    Mukherjee K; Alipanahi B; Kahveci T; Salmela L; Boucher C
    Bioinformatics; 2019 Sep; 35(18):3250-3256. PubMed ID: 30698651
    [TBL] [Abstract][Full Text] [Related]  

  • 12. AN EFFICIENT ALGORITHM FOR CHINESE POSTMAN WALK ON BI-DIRECTED DE BRUIJN GRAPHS.
    Kundeti V; Rajasekaran S; Dinh H
    Discrete Math Algorithms Appl; 2010; 1():184-196. PubMed ID: 25364472
    [TBL] [Abstract][Full Text] [Related]  

  • 13. FastEtch: A Fast Sketch-Based Assembler for Genomes.
    Ghosh P; Kalyanaraman A
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs.
    Heydari M; Miclotte G; Van de Peer Y; Fostier J
    BMC Bioinformatics; 2018 Sep; 19(1):311. PubMed ID: 30180801
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
    Limasset A; Flot JF; Peterlongo P
    Bioinformatics; 2020 Mar; 36(5):1374-1381. PubMed ID: 30785192
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast de Bruijn Graph Compaction in Distributed Memory Environments.
    Pan T; Nihalani R; Aluru S
    IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):136-148. PubMed ID: 30072337
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MEM-based pangenome indexing for
    Hwang S; Brown NK; Ahmed OY; Jenike KM; Kovaka S; Schatz MC; Langmead B
    bioRxiv; 2024 May; ():. PubMed ID: 38826299
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Challenges in gene-oriented approaches for pangenome content discovery.
    Bonnici V; Maresi E; Giugno R
    Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32893299
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pangenomic Genotyping with the Marker Array.
    Mun T; Vaddadi NSK; Langmead B
    Algorithms Bioinform; 2022 Sep; 242():. PubMed ID: 36409181
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
    Cherukuri Y; Janga SC
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.