177 related articles for article (PubMed ID: 35666124)
1. Studying the Dynamics of a Complex G-Quadruplex System: Insights into the Comparison of MD and NMR Data.
Castelli M; Doria F; Freccero M; Colombo G; Moroni E
J Chem Theory Comput; 2022 Jul; 18(7):4515-4528. PubMed ID: 35666124
[TBL] [Abstract][Full Text] [Related]
2. Molecular Dynamics Simulation Study of Parallel Telomeric DNA Quadruplexes at Different Ionic Strengths: Evaluation of Water and Ion Models.
Rebič M; Laaksonen A; Šponer J; Uličný J; Mocci F
J Phys Chem B; 2016 Aug; 120(30):7380-91. PubMed ID: 27379924
[TBL] [Abstract][Full Text] [Related]
3. Direct NMR detection of alkali metal ions bound to G-quadruplex DNA.
Ida R; Wu G
J Am Chem Soc; 2008 Mar; 130(11):3590-602. PubMed ID: 18293981
[TBL] [Abstract][Full Text] [Related]
4. Computational and Experimental Characterization of rDNA and rRNA G-Quadruplexes.
Green AT; Pickard AJ; Li R; MacKerell AD; Bierbach U; Cho SS
J Phys Chem B; 2022 Jan; 126(3):609-619. PubMed ID: 35026949
[TBL] [Abstract][Full Text] [Related]
5. Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe in.
Ditzler MA; Otyepka M; Sponer J; Walter NG
Acc Chem Res; 2010 Jan; 43(1):40-7. PubMed ID: 19754142
[TBL] [Abstract][Full Text] [Related]
6. Coarse-Grained Simulations Complemented by Atomistic Molecular Dynamics Provide New Insights into Folding and Unfolding of Human Telomeric G-Quadruplexes.
Stadlbauer P; Mazzanti L; Cragnolini T; Wales DJ; Derreumaux P; Pasquali S; Šponer J
J Chem Theory Comput; 2016 Dec; 12(12):6077-6097. PubMed ID: 27767303
[TBL] [Abstract][Full Text] [Related]
7. Structure of human telomeric DNA in crowded solution.
Heddi B; Phan AT
J Am Chem Soc; 2011 Jun; 133(25):9824-33. PubMed ID: 21548653
[TBL] [Abstract][Full Text] [Related]
8. Major G-Quadruplex Form of HIV-1 LTR Reveals a (3 + 1) Folding Topology Containing a Stem-Loop.
Butovskaya E; Heddi B; Bakalar B; Richter SN; Phan AT
J Am Chem Soc; 2018 Oct; 140(42):13654-13662. PubMed ID: 30299955
[TBL] [Abstract][Full Text] [Related]
9. Ligand Selectivity in the Recognition of Protoberberine Alkaloids by Hybrid-2 Human Telomeric G-Quadruplex: Binding Free Energy Calculation, Fluorescence Binding, and NMR Experiments.
Deng N; Xia J; Wickstrom L; Lin C; Wang K; He P; Yin Y; Yang D
Molecules; 2019 Apr; 24(8):. PubMed ID: 31010072
[TBL] [Abstract][Full Text] [Related]
10. De Novo Design of Selective Quadruplex-Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot-Spot.
Díaz-Casado L; Serrano-Chacón I; Montalvillo-Jiménez L; Corzana F; Bastida A; Santana AG; González C; Asensio JL
Chemistry; 2021 Apr; 27(20):6204-6212. PubMed ID: 33368678
[TBL] [Abstract][Full Text] [Related]
11. Base pair dynamics, electrostatics, and thermodynamics at the LTR-III quadruplex:duplex junction.
Michel HM; Lemkul JA
Biophys J; 2024 May; 123(9):1129-1138. PubMed ID: 38576161
[TBL] [Abstract][Full Text] [Related]
12. Molecular crowding effects on conformation and stability of G-quadruplex DNA structure: insights from molecular dynamics simulation.
Verdian Doghaei A; Housaindokht MR; Bozorgmehr MR
J Theor Biol; 2015 Jan; 364():103-12. PubMed ID: 25242297
[TBL] [Abstract][Full Text] [Related]
13. Benchmark Force Fields for the Molecular Dynamic Simulation of G-Quadruplexes.
Li N; Gao Y; Qiu F; Zhu T
Molecules; 2021 Sep; 26(17):. PubMed ID: 34500812
[TBL] [Abstract][Full Text] [Related]
14. Structural dynamics of the box C/D RNA kink-turn and its complex with proteins: the role of the A-minor 0 interaction, long-residency water bridges, and structural ion-binding sites revealed by molecular simulations.
Spacková N; Réblová K; Sponer J
J Phys Chem B; 2010 Aug; 114(32):10581-93. PubMed ID: 20701388
[TBL] [Abstract][Full Text] [Related]
15. The critical effect of polarization on the dynamical structure of guanine quadruplex DNA.
Song J; Ji C; Zhang JZ
Phys Chem Chem Phys; 2013 Mar; 15(11):3846-54. PubMed ID: 23399949
[TBL] [Abstract][Full Text] [Related]
16. A parallel stranded G-quadruplex composed of threose nucleic acid (TNA).
Liao JY; Anosova I; Bala S; Van Horn WD; Chaput JC
Biopolymers; 2017 Mar; 107(3):. PubMed ID: 27718227
[TBL] [Abstract][Full Text] [Related]
17. Novel G-quadruplex stabilizing agents: in-silico approach and dynamics.
Kar RK; Suryadevara P; Jana J; Bhunia A; Chatterjee S
J Biomol Struct Dyn; 2013 Dec; 31(12):1497-518. PubMed ID: 23244447
[TBL] [Abstract][Full Text] [Related]
18. Kinetics of sodium ion binding to DNA quadruplexes.
Deng H; Braunlin WH
J Mol Biol; 1996 Jan; 255(3):476-83. PubMed ID: 8568891
[TBL] [Abstract][Full Text] [Related]
19. NMR structure of a G-quadruplex formed by four d(G4C2) repeats: insights into structural polymorphism.
Brcic J; Plavec J
Nucleic Acids Res; 2018 Nov; 46(21):11605-11617. PubMed ID: 30277522
[TBL] [Abstract][Full Text] [Related]
20. G-quadruplex structures and G-quadruplex-interactive compounds.
Mathad RI; Yang D
Methods Mol Biol; 2011; 735():77-96. PubMed ID: 21461813
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
