These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 35669345)

  • 21. [Identification of neoantigens and development of antigen-specific immunotherapy].
    Shinohara S; Takahashi Y; Demachi-Okamura A; Matsushita H
    Rinsho Ketsueki; 2020; 61(9):1433-1439. PubMed ID: 33162546
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Indication-specific tumor evolution and its impact on neoantigen targeting and biomarkers for individualized cancer immunotherapies.
    Lo AA; Wallace A; Oreper D; Lounsbury N; Havnar C; Pechuan-Jorge X; Wu TD; Bourgon R; Jones R; Krogh K; Yang GY; Zill OA
    J Immunother Cancer; 2021 Oct; 9(10):. PubMed ID: 34599029
    [TBL] [Abstract][Full Text] [Related]  

  • 23. neoANT-HILL: an integrated tool for identification of potential neoantigens.
    Coelho ACMF; Fonseca AL; Martins DL; Lins PBR; da Cunha LM; de Souza SJ
    BMC Med Genomics; 2020 Feb; 13(1):30. PubMed ID: 32087727
    [TBL] [Abstract][Full Text] [Related]  

  • 24. CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme.
    Asghari H; Lin YY; Xu Y; Haghshenas E; Collins CC; Hach F
    Bioinformatics; 2020 Jun; 36(12):3703-3711. PubMed ID: 32259207
    [TBL] [Abstract][Full Text] [Related]  

  • 25. ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection.
    Li Y; Wang G; Tan X; Ouyang J; Zhang M; Song X; Liu Q; Leng Q; Chen L; Xie L
    BMC Med Genomics; 2020 Apr; 13(Suppl 5):52. PubMed ID: 32241270
    [TBL] [Abstract][Full Text] [Related]  

  • 26. IDENTIFICATION OF MHC PEPTIDES USING MASS SPECTROMETRY FOR NEOANTIGEN DISCOVERY AND CANCER VACCINE DEVELOPMENT.
    Chen R; Fulton KM; Twine SM; Li J
    Mass Spectrom Rev; 2021 Mar; 40(2):110-125. PubMed ID: 31875992
    [TBL] [Abstract][Full Text] [Related]  

  • 27. 'Hotspots' of Antigen Presentation Revealed by Human Leukocyte Antigen Ligandomics for Neoantigen Prioritization.
    Müller M; Gfeller D; Coukos G; Bassani-Sternberg M
    Front Immunol; 2017; 8():1367. PubMed ID: 29104575
    [TBL] [Abstract][Full Text] [Related]  

  • 28. SNPlice: variants that modulate Intron retention from RNA-sequencing data.
    Mudvari P; Movassagh M; Kowsari K; Seyfi A; Kokkinaki M; Edwards NJ; Golestaneh N; Horvath A
    Bioinformatics; 2015 Apr; 31(8):1191-8. PubMed ID: 25481010
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Neoantigen prediction in human breast cancer using RNA sequencing data.
    Hashimoto S; Noguchi E; Bando H; Miyadera H; Morii W; Nakamura T; Hara H
    Cancer Sci; 2021 Jan; 112(1):465-475. PubMed ID: 33155341
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Identification of T Cell Receptors Targeting a Neoantigen Derived from Recurrently Mutated FGFR3.
    Tate T; Matsumoto S; Nemoto K; Leisegang M; Nagayama S; Obama K; Nakamura Y; Kiyotani K
    Cancers (Basel); 2023 Feb; 15(4):. PubMed ID: 36831375
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Genomic analysis of 63,220 tumors reveals insights into tumor uniqueness and targeted cancer immunotherapy strategies.
    Hartmaier RJ; Charo J; Fabrizio D; Goldberg ME; Albacker LA; Pao W; Chmielecki J
    Genome Med; 2017 Feb; 9(1):16. PubMed ID: 28231819
    [TBL] [Abstract][Full Text] [Related]  

  • 33. DeepAntigen: a novel method for neoantigen prioritization via 3D genome and deep sparse learning.
    Shi Y; Guo Z; Su X; Meng L; Zhang M; Sun J; Wu C; Zheng M; Shang X; Zou X; Cheng W; Yu Y; Cai Y; Zhang C; Cai W; Da LT; He G; Han ZG
    Bioinformatics; 2020 Dec; 36(19):4894-4901. PubMed ID: 32592462
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Neoantigen landscape in metastatic nasopharyngeal carcinoma.
    Lin M; Zhang XL; You R; Yang Q; Zou X; Yu K; Liu YP; Zou RH; Hua YJ; Huang PY; Wang J; Zhao Q; Jiang XB; Tang J; Gu YK; Yu T; He GP; Xie YL; Wang ZQ; Liu T; Chen SY; Zuo ZX; Chen MY
    Theranostics; 2021; 11(13):6427-6444. PubMed ID: 33995666
    [No Abstract]   [Full Text] [Related]  

  • 35. ArtiFuse-computational validation of fusion gene detection tools without relying on simulated reads.
    Sorn P; Holtsträter C; Löwer M; Sahin U; Weber D
    Bioinformatics; 2020 Jan; 36(2):373-379. PubMed ID: 31373612
    [TBL] [Abstract][Full Text] [Related]  

  • 36. DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity.
    Wu J; Wang W; Zhang J; Zhou B; Zhao W; Su Z; Gu X; Wu J; Zhou Z; Chen S
    Front Immunol; 2019; 10():2559. PubMed ID: 31736974
    [TBL] [Abstract][Full Text] [Related]  

  • 37. INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.
    Zhang J; Mardis ER; Maher CA
    Bioinformatics; 2017 Feb; 33(4):555-557. PubMed ID: 27797777
    [TBL] [Abstract][Full Text] [Related]  

  • 38. pepsickle rapidly and accurately predicts proteasomal cleavage sites for improved neoantigen identification.
    Weeder BR; Wood MA; Li E; Nellore A; Thompson RF
    Bioinformatics; 2021 Nov; 37(21):3723-3733. PubMed ID: 34478497
    [TBL] [Abstract][Full Text] [Related]  

  • 39. dbPepNeo: a manually curated database for human tumor neoantigen peptides.
    Tan X; Li D; Huang P; Jian X; Wan H; Wang G; Li Y; Ouyang J; Lin Y; Xie L
    Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32090262
    [TBL] [Abstract][Full Text] [Related]  

  • 40. TopHat: discovering splice junctions with RNA-Seq.
    Trapnell C; Pachter L; Salzberg SL
    Bioinformatics; 2009 May; 25(9):1105-11. PubMed ID: 19289445
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.