152 related articles for article (PubMed ID: 35695743)
21. Capturing variation in metagenomic assembly graphs with MetaCortex.
Martin S; Ayling M; Patrono L; Caccamo M; Murcia P; Leggett RM
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36722204
[TBL] [Abstract][Full Text] [Related]
22. MOCAT2: a metagenomic assembly, annotation and profiling framework.
Kultima JR; Coelho LP; Forslund K; Huerta-Cepas J; Li SS; Driessen M; Voigt AY; Zeller G; Sunagawa S; Bork P
Bioinformatics; 2016 Aug; 32(16):2520-3. PubMed ID: 27153620
[TBL] [Abstract][Full Text] [Related]
23. PALADIN: protein alignment for functional profiling whole metagenome shotgun data.
Westbrook A; Ramsdell J; Schuelke T; Normington L; Bergeron RD; Thomas WK; MacManes MD
Bioinformatics; 2017 May; 33(10):1473-1478. PubMed ID: 28158639
[TBL] [Abstract][Full Text] [Related]
24. HoCoRT: host contamination removal tool.
Rumbavicius I; Rounge TB; Rognes T
BMC Bioinformatics; 2023 Oct; 24(1):371. PubMed ID: 37784008
[TBL] [Abstract][Full Text] [Related]
25. SimkaMin: fast and resource frugal de novo comparative metagenomics.
Benoit G; Mariadassou M; Robin S; Schbath S; Peterlongo P; Lemaitre C
Bioinformatics; 2020 Feb; 36(4):1275-1276. PubMed ID: 31504187
[TBL] [Abstract][Full Text] [Related]
26. PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.
Torres PJ; Edwards RA; McNair KA
Bioinformatics; 2017 Aug; 33(15):2389-2391. PubMed ID: 28369246
[TBL] [Abstract][Full Text] [Related]
27. SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data.
Silva GG; Green KT; Dutilh BE; Edwards RA
Bioinformatics; 2016 Feb; 32(3):354-61. PubMed ID: 26454280
[TBL] [Abstract][Full Text] [Related]
28. Axe: rapid, competitive sequence read demultiplexing using a trie.
Murray KD; Borevitz JO
Bioinformatics; 2018 Nov; 34(22):3924-3925. PubMed ID: 29868827
[TBL] [Abstract][Full Text] [Related]
29. Methplotlib: analysis of modified nucleotides from nanopore sequencing.
De Coster W; Stovner EB; Strazisar M
Bioinformatics; 2020 May; 36(10):3236-3238. PubMed ID: 32053166
[TBL] [Abstract][Full Text] [Related]
30. BreakPoint Surveyor: a pipeline for structural variant visualization.
Wyczalkowski MA; Wylie KM; Cao S; McLellan MD; Flynn J; Huang M; Ye K; Fan X; Chen K; Wendl MC; Ding L
Bioinformatics; 2017 Oct; 33(19):3121-3122. PubMed ID: 28582538
[TBL] [Abstract][Full Text] [Related]
31. PSORTm: a bacterial and archaeal protein subcellular localization prediction tool for metagenomics data.
Peabody MA; Lau WYV; Hoad GR; Jia B; Maguire F; Gray KL; Beiko RG; Brinkman FSL
Bioinformatics; 2020 May; 36(10):3043-3048. PubMed ID: 32108861
[TBL] [Abstract][Full Text] [Related]
32. CAFE: a software suite for analysis of paired-sample transposon insertion sequencing data.
Abramova A; Osińska A; Kunche H; Burman E; Bengtsson-Palme J
Bioinformatics; 2021 Apr; 37(1):121-122. PubMed ID: 33393985
[TBL] [Abstract][Full Text] [Related]
33. STEMSIM: a simulator of within-strain short-term evolutionary mutations for longitudinal metagenomic data.
Zhou B; Li H
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37154701
[TBL] [Abstract][Full Text] [Related]
34. MetaMarker: a pipeline for de novo discovery of novel metagenomic biomarkers.
Koohi-Moghadam M; Borad MJ; Tran NL; Swanson KR; Boardman LA; Sun H; Wang J
Bioinformatics; 2019 Oct; 35(19):3812-3814. PubMed ID: 30825371
[TBL] [Abstract][Full Text] [Related]
35. BleTIES: annotation of natural genome editing in ciliates using long read sequencing.
Seah BKB; Swart EC
Bioinformatics; 2021 Nov; 37(21):3929-3931. PubMed ID: 34487139
[TBL] [Abstract][Full Text] [Related]
36. MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes.
Ward LM; Shih PM; Fischer WW
Bioinformatics; 2018 Dec; 34(24):4284-4286. PubMed ID: 29939199
[TBL] [Abstract][Full Text] [Related]
37. MIDAS2: Metagenomic Intra-species Diversity Analysis System.
Zhao C; Dimitrov B; Goldman M; Nayfach S; Pollard KS
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321886
[TBL] [Abstract][Full Text] [Related]
38. CoCoNet: an efficient deep learning tool for viral metagenome binning.
Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
[TBL] [Abstract][Full Text] [Related]
39. Metagenomic binning through low-density hashing.
Luo Y; Yu YW; Zeng J; Berger B; Peng J
Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
[TBL] [Abstract][Full Text] [Related]
40. Binning_refiner: improving genome bins through the combination of different binning programs.
Song WZ; Thomas T
Bioinformatics; 2017 Jun; 33(12):1873-1875. PubMed ID: 28186226
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
