These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 35695743)

  • 61. SCRAM: a pipeline for fast index-free small RNA read alignment and visualization.
    Fletcher SJ; Boden M; Mitter N; Carroll BJ
    Bioinformatics; 2018 Aug; 34(15):2670-2672. PubMed ID: 29554210
    [TBL] [Abstract][Full Text] [Related]  

  • 62. MAGScoT: a fast, lightweight and accurate bin-refinement tool.
    Rühlemann MC; Wacker EM; Ellinghaus D; Franke A
    Bioinformatics; 2022 Dec; 38(24):5430-5433. PubMed ID: 36264141
    [TBL] [Abstract][Full Text] [Related]  

  • 63. MeCorS: Metagenome-enabled error correction of single cell sequencing reads.
    Bremges A; Singer E; Woyke T; Sczyrba A
    Bioinformatics; 2016 Jul; 32(14):2199-201. PubMed ID: 27153586
    [TBL] [Abstract][Full Text] [Related]  

  • 64. MetaCache: context-aware classification of metagenomic reads using minhashing.
    Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
    Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
    [TBL] [Abstract][Full Text] [Related]  

  • 65. Struo: a pipeline for building custom databases for common metagenome profilers.
    de la Cuesta-Zuluaga J; Ley RE; Youngblut ND
    Bioinformatics; 2020 Apr; 36(7):2314-2315. PubMed ID: 31778148
    [TBL] [Abstract][Full Text] [Related]  

  • 66. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 67. Phyx: phylogenetic tools for unix.
    Brown JW; Walker JF; Smith SA
    Bioinformatics; 2017 Jun; 33(12):1886-1888. PubMed ID: 28174903
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Reduced metagenome sequencing for strain-resolution taxonomic profiles.
    Snipen L; Angell IL; Rognes T; Rudi K
    Microbiome; 2021 Mar; 9(1):79. PubMed ID: 33781324
    [TBL] [Abstract][Full Text] [Related]  

  • 69. AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite.
    Skoufos G; Almodaresi F; Zakeri M; Paulson JN; Patro R; Hatzigeorgiou AG; Vlachos IS
    Genome Biol; 2022 Jan; 23(1):39. PubMed ID: 35101114
    [TBL] [Abstract][Full Text] [Related]  

  • 70. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
    Avvaru AK; Sowpati DT; Mishra RK
    Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
    [TBL] [Abstract][Full Text] [Related]  

  • 71. SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline.
    Krapohl J; Pickett BE
    F1000Res; 2022; 11():265. PubMed ID: 37469625
    [TBL] [Abstract][Full Text] [Related]  

  • 72. MIRMMR: binary classification of microsatellite instability using methylation and mutations.
    Foltz SM; Liang WW; Xie M; Ding L
    Bioinformatics; 2017 Dec; 33(23):3799-3801. PubMed ID: 28961932
    [TBL] [Abstract][Full Text] [Related]  

  • 73. Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes.
    Guo J; Cole JR; Zhang Q; Brown CT; Tiedje JM
    Appl Environ Microbiol; 2016 Jan; 82(1):157-66. PubMed ID: 26475107
    [TBL] [Abstract][Full Text] [Related]  

  • 74. PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences.
    Zielezinski A; Deorowicz S; Gudyś A
    Bioinformatics; 2022 Feb; 38(5):1447-1449. PubMed ID: 34904625
    [TBL] [Abstract][Full Text] [Related]  

  • 75. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
    Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
    BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
    [TBL] [Abstract][Full Text] [Related]  

  • 76. OrfM: a fast open reading frame predictor for metagenomic data.
    Woodcroft BJ; Boyd JA; Tyson GW
    Bioinformatics; 2016 Sep; 32(17):2702-3. PubMed ID: 27153669
    [TBL] [Abstract][Full Text] [Related]  

  • 77. MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations.
    Liao KH; Hon WK; Tang CY; Hsieh WP
    Bioinformatics; 2019 May; 35(10):1677-1685. PubMed ID: 30321266
    [TBL] [Abstract][Full Text] [Related]  

  • 78. ANAQUIN: a software toolkit for the analysis of spike-in controls for next generation sequencing.
    Wong T; Deveson IW; Hardwick SA; Mercer TR
    Bioinformatics; 2017 Jun; 33(11):1723-1724. PubMed ID: 28130232
    [TBL] [Abstract][Full Text] [Related]  

  • 79. TieBrush: an efficient method for aggregating and summarizing mapped reads across large datasets.
    Varabyou A; Pertea G; Pockrandt C; Pertea M
    Bioinformatics; 2021 Oct; 37(20):3650-3651. PubMed ID: 33964128
    [TBL] [Abstract][Full Text] [Related]  

  • 80. SASpector: analysis of missing genomic regions in draft genomes of prokaryotes.
    Lood C; Correa Rojo A; Sinar D; Verkinderen E; Lavigne R; Noort VV
    Bioinformatics; 2022 May; 38(10):2920-2921. PubMed ID: 35561201
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.