These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
119 related articles for article (PubMed ID: 35703937)
1. DrawTetrado to create layer diagrams of G4 structures. Zurkowski M; Zok T; Szachniuk M Bioinformatics; 2022 Aug; 38(15):3835-3836. PubMed ID: 35703937 [TBL] [Abstract][Full Text] [Related]
2. UpSetR: an R package for the visualization of intersecting sets and their properties. Conway JR; Lex A; Gehlenborg N Bioinformatics; 2017 Sep; 33(18):2938-2940. PubMed ID: 28645171 [TBL] [Abstract][Full Text] [Related]
3. SSDraw: Software for generating comparative protein secondary structure diagrams. Chen EA; Porter LL Protein Sci; 2023 Dec; 32(12):e4836. PubMed ID: 37953705 [TBL] [Abstract][Full Text] [Related]
4. AMIGOS III: pseudo-torsion angle visualization and motif-based structure comparison of nucleic acids. Shine M; Zhang C; Pyle AM Bioinformatics; 2022 May; 38(10):2937-2939. PubMed ID: 35561202 [TBL] [Abstract][Full Text] [Related]
5. ElTetrado: a tool for identification and classification of tetrads and quadruplexes. Zok T; Popenda M; Szachniuk M BMC Bioinformatics; 2020 Jan; 21(1):40. PubMed ID: 32005130 [TBL] [Abstract][Full Text] [Related]
6. Topology-based classification of tetrads and quadruplex structures. Popenda M; Miskiewicz J; Sarzynska J; Zok T; Szachniuk M Bioinformatics; 2020 Feb; 36(4):1129-1134. PubMed ID: 31588513 [TBL] [Abstract][Full Text] [Related]
7. Reactome diagram viewer: data structures and strategies to boost performance. Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351 [TBL] [Abstract][Full Text] [Related]
8. Explore, edit and leverage genomic annotations using Python GTF toolkit. Lopez F; Charbonnier G; Kermezli Y; Belhocine M; Ferré Q; Zweig N; Aribi M; Gonzalez A; Spicuglia S; Puthier D Bioinformatics; 2019 Sep; 35(18):3487-3488. PubMed ID: 30768152 [TBL] [Abstract][Full Text] [Related]
9. ssbio: a Python framework for structural systems biology. Mih N; Brunk E; Chen K; Catoiu E; Sastry A; Kavvas E; Monk JM; Zhang Z; Palsson BO Bioinformatics; 2018 Jun; 34(12):2155-2157. PubMed ID: 29444205 [TBL] [Abstract][Full Text] [Related]
11. Barnaba: software for analysis of nucleic acid structures and trajectories. Bottaro S; Bussi G; Pinamonti G; Reißer S; Boomsma W; Lindorff-Larsen K RNA; 2019 Feb; 25(2):219-231. PubMed ID: 30420522 [TBL] [Abstract][Full Text] [Related]
12. Motif scraper: a cross-platform, open-source tool for identifying degenerate nucleotide motif matches in FASTA files. Roberson EDO Bioinformatics; 2018 Nov; 34(22):3926-3928. PubMed ID: 29850891 [TBL] [Abstract][Full Text] [Related]
13. The super-n-motifs model: a novel alignment-free approach for representing and comparing RNA secondary structures. Glouzon JS; Perreault JP; Wang S Bioinformatics; 2017 Apr; 33(8):1169-1178. PubMed ID: 28088762 [TBL] [Abstract][Full Text] [Related]
14. Nezzle: an interactive and programmable visualization of biological networks in Python. Lee D Bioinformatics; 2022 Jun; 38(12):3310-3311. PubMed ID: 35552638 [TBL] [Abstract][Full Text] [Related]
17. ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets. Fernández Navarro J; Lundeberg J; Ståhl PL Bioinformatics; 2019 Mar; 35(6):1058-1060. PubMed ID: 30875427 [TBL] [Abstract][Full Text] [Related]
18. OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. Davidson RB; Woods J; Effler TC; Thavappiragasam M; Mitchell JC; Parks JM; Sedova A Bioinformatics; 2022 Jun; 38(12):3297-3298. PubMed ID: 35512391 [TBL] [Abstract][Full Text] [Related]
19. BioStructMap: a Python tool for integration of protein structure and sequence-based features. Guy AJ; Irani V; Richards JS; Ramsland PA Bioinformatics; 2018 Nov; 34(22):3942-3944. PubMed ID: 29931276 [TBL] [Abstract][Full Text] [Related]
20. Quantitative analysis of nucleic acid three-dimensional structures. Gendron P; Lemieux S; Major F J Mol Biol; 2001 May; 308(5):919-36. PubMed ID: 11352582 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]