BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 35707452)

  • 1. The National Ecological Observatory Network's soil metagenomes: assembly and basic analysis.
    Werbin ZR; Hackos B; Lopez-Nava J; Dietze MC; Bhatnagar JM
    F1000Res; 2021; 10():299. PubMed ID: 35707452
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
    Brumfield KD; Huq A; Colwell RR; Olds JL; Leddy MB
    PLoS One; 2020; 15(2):e0228899. PubMed ID: 32053657
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Deduplication Improves Cost-Efficiency and Yields of
    Zhang Z; Zhang L; Zhang G; Zhao Z; Wang H; Ju F
    Microbiol Spectr; 2023 Feb; 11(2):e0428222. PubMed ID: 36744896
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
    Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
    BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Metagenomics Bioinformatic Pipeline.
    Garfias-Gallegos D; Zirión-Martínez C; Bustos-Díaz ED; Arellano-Fernández TV; Lovaco-Flores JA; Espinosa-Jaime A; Avelar-Rivas JA; Sélem-Mójica N
    Methods Mol Biol; 2022; 2512():153-179. PubMed ID: 35818005
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes.
    Ma ZS
    BMC Bioinformatics; 2024 Mar; 25(1):137. PubMed ID: 38553666
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.
    Kim CY; Lee M; Yang S; Kim K; Yong D; Kim HR; Lee I
    Genome Med; 2021 Aug; 13(1):134. PubMed ID: 34446072
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An in-depth evaluation of metagenomic classifiers for soil microbiomes.
    Edwin NR; Fitzpatrick AH; Brennan F; Abram F; O'Sullivan O
    Environ Microbiome; 2024 Mar; 19(1):19. PubMed ID: 38549112
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MGS-Fast: Metagenomic shotgun data fast annotation using microbial gene catalogs.
    Brown SM; Chen H; Hao Y; Laungani BP; Ali TA; Dong C; Lijeron C; Kim B; Wultsch C; Pei Z; Krampis K
    Gigascience; 2019 Apr; 8(4):. PubMed ID: 30942867
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DOE JGI Metagenome Workflow.
    Clum A; Huntemann M; Bushnell B; Foster B; Foster B; Roux S; Hajek PP; Varghese N; Mukherjee S; Reddy TBK; Daum C; Yoshinaga Y; O'Malley R; Seshadri R; Kyrpides NC; Eloe-Fadrosh EA; Chen IA; Copeland A; Ivanova NN
    mSystems; 2021 May; 6(3):. PubMed ID: 34006627
    [TBL] [Abstract][Full Text] [Related]  

  • 11.
    Tadrent N; Dedeine F; Hervé V
    F1000Res; 2022; 11():1522. PubMed ID: 36875992
    [No Abstract]   [Full Text] [Related]  

  • 12. Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
    Hooper SD; Dalevi D; Pati A; Mavromatis K; Ivanova NN; Kyrpides NC
    Bioinformatics; 2010 Feb; 26(3):295-301. PubMed ID: 20008478
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
    White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK
    mSystems; 2016; 1(3):. PubMed ID: 27822530
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluating
    Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
    Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Strainberry: automated strain separation in low-complexity metagenomes using long reads.
    Vicedomini R; Quince C; Darling AE; Chikhi R
    Nat Commun; 2021 Jul; 12(1):4485. PubMed ID: 34301928
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Metagenomic Assembly: Reconstructing Genomes from Metagenomes.
    Wang Z; Liang JL; Huang LN; Mengoni A; Shu WS
    Methods Mol Biol; 2021; 2242():139-152. PubMed ID: 33961222
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improvement of eukaryotic protein predictions from soil metagenomes.
    Belliardo C; Koutsovoulos GD; Rancurel C; Clément M; Lipuma J; Bailly-Bechet M; Danchin EGJ
    Sci Data; 2022 Jun; 9(1):311. PubMed ID: 35710557
    [TBL] [Abstract][Full Text] [Related]  

  • 18. NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language.
    Coelho LP; Alves R; Monteiro P; Huerta-Cepas J; Freitas AT; Bork P
    Microbiome; 2019 Jun; 7(1):84. PubMed ID: 31159881
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational workflow for the fine-grained analysis of metagenomic samples.
    Pérez-Wohlfeil E; Arjona-Medina JA; Torreno O; Ulzurrun E; Trelles O
    BMC Genomics; 2016 Oct; 17(Suppl 8):802. PubMed ID: 27801291
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metagenome Assembly and Contig Assignment.
    Zhang Q
    Methods Mol Biol; 2018; 1849():179-192. PubMed ID: 30298255
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.