140 related articles for article (PubMed ID: 35708611)
1. Shepherd: accurate clustering for correcting DNA barcode errors.
Tavakolian N; Frazão JG; Bendixsen D; Stelkens R; Li CB
Bioinformatics; 2022 Aug; 38(15):3710-3716. PubMed ID: 35708611
[TBL] [Abstract][Full Text] [Related]
2. Pheniqs 2.0: accurate, high-performance Bayesian decoding and confidence estimation for combinatorial barcode indexing.
Galanti L; Shasha D; Gunsalus KC
BMC Bioinformatics; 2021 Jul; 22(1):359. PubMed ID: 34215187
[TBL] [Abstract][Full Text] [Related]
3. Bartender: a fast and accurate clustering algorithm to count barcode reads.
Zhao L; Liu Z; Levy SF; Wu S
Bioinformatics; 2018 Mar; 34(5):739-747. PubMed ID: 29069318
[TBL] [Abstract][Full Text] [Related]
4. Levenshtein error-correcting barcodes for multiplexed DNA sequencing.
Buschmann T; Bystrykh LV
BMC Bioinformatics; 2013 Sep; 14():272. PubMed ID: 24021088
[TBL] [Abstract][Full Text] [Related]
5. Indel-correcting DNA barcodes for high-throughput sequencing.
Hawkins JA; Jones SK; Finkelstein IJ; Press WH
Proc Natl Acad Sci U S A; 2018 Jul; 115(27):E6217-E6226. PubMed ID: 29925596
[TBL] [Abstract][Full Text] [Related]
6. Insertion and deletion correcting DNA barcodes based on watermarks.
Kracht D; Schober S
BMC Bioinformatics; 2015 Feb; 16():50. PubMed ID: 25887410
[TBL] [Abstract][Full Text] [Related]
7. Best Practices in Designing, Sequencing, and Identifying Random DNA Barcodes.
Johnson MS; Venkataram S; Kryazhimskiy S
J Mol Evol; 2023 Jun; 91(3):263-280. PubMed ID: 36651964
[TBL] [Abstract][Full Text] [Related]
8. Barcode identification for single cell genomics.
Tambe A; Pachter L
BMC Bioinformatics; 2019 Jan; 20(1):32. PubMed ID: 30654736
[TBL] [Abstract][Full Text] [Related]
9. Scalable Combinatorial Assembly of Synthetic DNA for Tracking Applications.
Stuart JD; Wickenkamp NR; Davis KA; Meyer C; Kading RC; Snow CD
Int J Mol Sci; 2023 Jan; 24(3):. PubMed ID: 36768872
[TBL] [Abstract][Full Text] [Related]
10. Alignment-free clustering of UMI tagged DNA molecules.
Orabi B; Erhan E; McConeghy B; Volik SV; Le Bihan S; Bell R; Collins CC; Chauve C; Hach F
Bioinformatics; 2019 Jun; 35(11):1829-1836. PubMed ID: 30351359
[TBL] [Abstract][Full Text] [Related]
11. Barcode-free next-generation sequencing error validation for ultra-rare variant detection.
Yeom H; Lee Y; Ryu T; Noh J; Lee AC; Lee HB; Kang E; Song SW; Kwon S
Nat Commun; 2019 Feb; 10(1):977. PubMed ID: 30816127
[TBL] [Abstract][Full Text] [Related]
12. Starcode: sequence clustering based on all-pairs search.
Zorita E; Cuscó P; Filion GJ
Bioinformatics; 2015 Jun; 31(12):1913-9. PubMed ID: 25638815
[TBL] [Abstract][Full Text] [Related]
13. Constructing DNA Barcode Sets Based on Particle Swarm Optimization.
Wang B; Zheng X; Zhou S; Zhou C; Wei X; Zhang Q; Wei Z
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):999-1002. PubMed ID: 28287980
[TBL] [Abstract][Full Text] [Related]
14. Pacybara: accurate long-read sequencing for barcoded mutagenized allelic libraries.
Weile J; Ferra G; Boyle G; Pendyala S; Amorosi C; Yeh CL; Cote AG; Kishore N; Tabet D; van Loggerenberg W; Rayhan A; Fowler DM; Dunham MJ; Roth FP
Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38569896
[TBL] [Abstract][Full Text] [Related]
15. Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells.
Beltman JB; Urbanus J; Velds A; van Rooij N; Rohr JC; Naik SH; Schumacher TN
BMC Bioinformatics; 2016 Apr; 17():151. PubMed ID: 27038897
[TBL] [Abstract][Full Text] [Related]
16. Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate.
Buschmann T; Zhang R; Brash DE; Bystrykh LV
BMC Bioinformatics; 2014 Aug; 15(1):264. PubMed ID: 25099007
[TBL] [Abstract][Full Text] [Related]
17. Accurate estimation of molecular counts from amplicon sequence data with unique molecular identifiers.
Peng X; Dorman KS
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610988
[TBL] [Abstract][Full Text] [Related]
18. ACE: accurate correction of errors using K-mer tries.
Sheikhizadeh S; de Ridder D
Bioinformatics; 2015 Oct; 31(19):3216-8. PubMed ID: 26026137
[TBL] [Abstract][Full Text] [Related]
19. DACE: a scalable DP-means algorithm for clustering extremely large sequence data.
Jiang L; Dong Y; Chen N; Chen T
Bioinformatics; 2017 Mar; 33(6):834-842. PubMed ID: 28025198
[TBL] [Abstract][Full Text] [Related]
20. Fiona: a parallel and automatic strategy for read error correction.
Schulz MH; Weese D; Holtgrewe M; Dimitrova V; Niu S; Reinert K; Richard H
Bioinformatics; 2014 Sep; 30(17):i356-63. PubMed ID: 25161220
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
