These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
184 related articles for article (PubMed ID: 35731204)
1. matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2. Ye C; Thornlow B; Hinrichs A; Kramer A; Mirchandani C; Torvi D; Lanfear R; Corbett-Detig R; Turakhia Y Bioinformatics; 2022 Aug; 38(15):3734-3740. PubMed ID: 35731204 [TBL] [Abstract][Full Text] [Related]
2. Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations. Kramer AM; Thornlow B; Ye C; De Maio N; McBroome J; Hinrichs AS; Lanfear R; Turakhia Y; Corbett-Detig R Syst Biol; 2023 Nov; 72(5):1039-1051. PubMed ID: 37232476 [TBL] [Abstract][Full Text] [Related]
3. A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees. McBroome J; Thornlow B; Hinrichs AS; Kramer A; De Maio N; Goldman N; Haussler D; Corbett-Detig R; Turakhia Y Mol Biol Evol; 2021 Dec; 38(12):5819-5824. PubMed ID: 34469548 [TBL] [Abstract][Full Text] [Related]
5. Taxonium, a web-based tool for exploring large phylogenetic trees. Sanderson T Elife; 2022 Nov; 11():. PubMed ID: 36377483 [TBL] [Abstract][Full Text] [Related]
6. Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic. Turakhia Y; Thornlow B; Hinrichs AS; De Maio N; Gozashti L; Lanfear R; Haussler D; Corbett-Detig R bioRxiv; 2020 Sep; ():. PubMed ID: 33024970 [TBL] [Abstract][Full Text] [Related]
7. TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Caraballo-Ortiz MA; Miura S; Sanderford M; Dolker T; Tao Q; Weaver S; Pond SLK; Kumar S Bioinformatics; 2022 May; 38(10):2719-2726. PubMed ID: 35561179 [TBL] [Abstract][Full Text] [Related]
8. Phytest: quality control for phylogenetic analyses. Wirth W; Mutch S; Turnbull R; Duchene S Bioinformatics; 2022 Nov; 38(22):5124-5125. PubMed ID: 36205601 [TBL] [Abstract][Full Text] [Related]
9. Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic. Turakhia Y; Thornlow B; Hinrichs AS; De Maio N; Gozashti L; Lanfear R; Haussler D; Corbett-Detig R Nat Genet; 2021 Jun; 53(6):809-816. PubMed ID: 33972780 [TBL] [Abstract][Full Text] [Related]
10. A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees. McBroome J; Thornlow B; Hinrichs AS; De Maio N; Goldman N; Haussler D; Corbett-Detig R; Turakhia Y bioRxiv; 2021 Jul; ():. PubMed ID: 33821270 [TBL] [Abstract][Full Text] [Related]
11. DecentTree: scalable Neighbour-Joining for the genomic era. Wang W; Barbetti J; Wong T; Thornlow B; Corbett-Detig R; Turakhia Y; Lanfear R; Minh BQ Bioinformatics; 2023 Sep; 39(9):. PubMed ID: 37651445 [TBL] [Abstract][Full Text] [Related]