These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. In silico identification of the key components and steps in IFN-gamma induced JAK-STAT signaling pathway. Zi Z; Cho KH; Sung MH; Xia X; Zheng J; Sun Z FEBS Lett; 2005 Feb; 579(5):1101-8. PubMed ID: 15710397 [TBL] [Abstract][Full Text] [Related]
4. A simple work flow for biologically inspired model reduction--application to early JAK-STAT signaling. Quaiser T; Dittrich A; Schaper F; Mönnigmann M BMC Syst Biol; 2011 Feb; 5():30. PubMed ID: 21338487 [TBL] [Abstract][Full Text] [Related]
5. Petri nets and ODEs as complementary methods for comprehensive analysis on an example of the ATM-p53-NF-[Formula: see text]B signaling pathways. Gutowska K; Kogut D; Kardynska M; Formanowicz P; Smieja J; Puszynski K Sci Rep; 2022 Jan; 12(1):1135. PubMed ID: 35064163 [TBL] [Abstract][Full Text] [Related]
6. Model-based selection of the robust JAK-STAT activation mechanism. Rybiński M; Gambin A J Theor Biol; 2012 Sep; 309():34-46. PubMed ID: 22677400 [TBL] [Abstract][Full Text] [Related]
8. Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways. Alves R; Vilaprinyo E; Hernádez-Bermejo B; Sorribas A Biotechnol Genet Eng Rev; 2008; 25():1-40. PubMed ID: 21412348 [TBL] [Abstract][Full Text] [Related]
9. Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes. Singh A; Jayaraman A; Hahn J Biotechnol Bioeng; 2006 Dec; 95(5):850-62. PubMed ID: 16752369 [TBL] [Abstract][Full Text] [Related]
10. Boolean network modeling in systems pharmacology. Bloomingdale P; Nguyen VA; Niu J; Mager DE J Pharmacokinet Pharmacodyn; 2018 Feb; 45(1):159-180. PubMed ID: 29307099 [TBL] [Abstract][Full Text] [Related]
11. Systematic identifiability testing for unambiguous mechanistic modeling--application to JAK-STAT, MAP kinase, and NF-kappaB signaling pathway models. Quaiser T; Mönnigmann M BMC Syst Biol; 2009 May; 3():50. PubMed ID: 19426527 [TBL] [Abstract][Full Text] [Related]
12. Adjoint systems for models of cell signaling pathways and their application to parameter fitting. Fujarewicz K; Kimmel M; Lipniacki T; Swierniak A IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):322-335. PubMed ID: 17666754 [TBL] [Abstract][Full Text] [Related]
13. Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm. Stoll G; Viara E; Barillot E; Calzone L BMC Syst Biol; 2012 Aug; 6():116. PubMed ID: 22932419 [TBL] [Abstract][Full Text] [Related]
14. Bioinformatics analyses for signal transduction networks. Liu W; Li D; Zhu Y; He F Sci China C Life Sci; 2008 Nov; 51(11):994-1002. PubMed ID: 18989642 [TBL] [Abstract][Full Text] [Related]