These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 35751806)

  • 21. SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.
    Niknafs N; Beleva-Guthrie V; Naiman DQ; Karchin R
    PLoS Comput Biol; 2015 Oct; 11(10):e1004416. PubMed ID: 26436540
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal.
    Sun JX; He Y; Sanford E; Montesion M; Frampton GM; Vignot S; Soria JC; Ross JS; Miller VA; Stephens PJ; Lipson D; Yelensky R
    PLoS Comput Biol; 2018 Feb; 14(2):e1005965. PubMed ID: 29415044
    [TBL] [Abstract][Full Text] [Related]  

  • 23. VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.
    Lai Z; Markovets A; Ahdesmaki M; Chapman B; Hofmann O; McEwen R; Johnson J; Dougherty B; Barrett JC; Dry JR
    Nucleic Acids Res; 2016 Jun; 44(11):e108. PubMed ID: 27060149
    [TBL] [Abstract][Full Text] [Related]  

  • 24. CHOPER filters enable rare mutation detection in complex mutagenesis populations by next-generation sequencing.
    Salehi F; Baronio R; Idrogo-Lam R; Vu H; Hall LV; Kaiser P; Lathrop RH
    PLoS One; 2015; 10(2):e0116877. PubMed ID: 25692681
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers.
    Wang Q; Jia P; Li F; Chen H; Ji H; Hucks D; Dahlman KB; Pao W; Zhao Z
    Genome Med; 2013; 5(10):91. PubMed ID: 24112718
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Nuclease-Assisted, Multiplexed Minor-Allele Enrichment: Application in Liquid Biopsy of Cancer.
    Yu F; Leong KW; Makrigiorgos GM
    Methods Mol Biol; 2022; 2394():433-451. PubMed ID: 35094339
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Detection of ultra-rare mutations by next-generation sequencing.
    Schmitt MW; Kennedy SR; Salk JJ; Fox EJ; Hiatt JB; Loeb LA
    Proc Natl Acad Sci U S A; 2012 Sep; 109(36):14508-13. PubMed ID: 22853953
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Accurate detection of subclonal single nucleotide variants in whole genome amplified and pooled cancer samples using HaloPlex target enrichment.
    Berglund EC; Lindqvist CM; Hayat S; Övernäs E; Henriksson N; Nordlund J; Wahlberg P; Forestier E; Lönnerholm G; Syvänen AC
    BMC Genomics; 2013 Dec; 14(1):856. PubMed ID: 24314227
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples.
    Halperin RF; Liang WS; Kulkarni S; Tassone EE; Adkins J; Enriquez D; Tran NL; Hank NC; Newell J; Kodira C; Korn R; Berens ME; Kim S; Byron SA
    Front Oncol; 2019; 9():119. PubMed ID: 30949446
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data.
    Karimnezhad A; Palidwor GA; Thavorn K; Stewart DJ; Campbell PA; Lo B; Perkins TJ
    BMC Med Genomics; 2020 Oct; 13(1):156. PubMed ID: 33059707
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation.
    Hiatt JB; Pritchard CC; Salipante SJ; O'Roak BJ; Shendure J
    Genome Res; 2013 May; 23(5):843-54. PubMed ID: 23382536
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Sensitivity of next-generation sequencing assays detecting oncogenic fusions in plasma cell-free DNA.
    Supplee JG; Milan MSD; Lim LP; Potts KT; Sholl LM; Oxnard GR; Paweletz CP
    Lung Cancer; 2019 Aug; 134():96-99. PubMed ID: 31320002
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Integration of intra-sample contextual error modeling for improved detection of somatic mutations from deep sequencing.
    Abelson S; Zeng AGX; Nofech-Mozes I; Wang TT; Ng SWK; Minden MD; Pugh TJ; Awadalla P; Shlush LI; Murphy T; Chan SM; Dick JE; Bratman SV
    Sci Adv; 2020 Dec; 6(50):. PubMed ID: 33298453
    [TBL] [Abstract][Full Text] [Related]  

  • 34. High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq).
    Preston JL; Royall AE; Randel MA; Sikkink KL; Phillips PC; Johnson EA
    BMC Genomics; 2016 Jun; 17():464. PubMed ID: 27301885
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Calling small variants using universality with Bayes-factor-adjusted odds ratios.
    Zhao X; Hu AC; Wang S; Wang X
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34791010
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples.
    Cibulskis K; Lawrence MS; Carter SL; Sivachenko A; Jaffe D; Sougnez C; Gabriel S; Meyerson M; Lander ES; Getz G
    Nat Biotechnol; 2013 Mar; 31(3):213-9. PubMed ID: 23396013
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data.
    Zhang F; Flaherty P
    BMC Bioinformatics; 2017 Jan; 18(1):45. PubMed ID: 28103803
    [TBL] [Abstract][Full Text] [Related]  

  • 38. DeTiN: overcoming tumor-in-normal contamination.
    Taylor-Weiner A; Stewart C; Giordano T; Miller M; Rosenberg M; Macbeth A; Lennon N; Rheinbay E; Landau DA; Wu CJ; Getz G
    Nat Methods; 2018 Jul; 15(7):531-534. PubMed ID: 29941871
    [TBL] [Abstract][Full Text] [Related]  

  • 39. ISOWN: accurate somatic mutation identification in the absence of normal tissue controls.
    Kalatskaya I; Trinh QM; Spears M; McPherson JD; Bartlett JMS; Stein L
    Genome Med; 2017 Jun; 9(1):59. PubMed ID: 28659176
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Calling Chromosome Alterations, DNA Methylation Statuses, and Mutations in Tumors by Simple Targeted Next-Generation Sequencing: A Solution for Transferring Integrated Pangenomic Studies into Routine Practice?
    Garinet S; Néou M; de La Villéon B; Faillot S; Sakat J; Da Fonseca JP; Jouinot A; Le Tourneau C; Kamal M; Luscap-Rondof W; Boeva V; Gaujoux S; Vidaud M; Pasmant E; Letourneur F; Bertherat J; Assié G
    J Mol Diagn; 2017 Sep; 19(5):776-787. PubMed ID: 28826610
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.