112 related articles for article (PubMed ID: 35751807)
1. Octopus: Genotyping and Haplotyping in Diverse Experimental Designs.
Cooke DP
Methods Mol Biol; 2022; 2493():29-51. PubMed ID: 35751807
[TBL] [Abstract][Full Text] [Related]
2. A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.
Kojima K; Nariai N; Mimori T; Takahashi M; Yamaguchi-Kabata Y; Sato Y; Nagasaki M
Bioinformatics; 2013 Nov; 29(22):2835-43. PubMed ID: 24002111
[TBL] [Abstract][Full Text] [Related]
3. A unified haplotype-based method for accurate and comprehensive variant calling.
Cooke DP; Wedge DC; Lunter G
Nat Biotechnol; 2021 Jul; 39(7):885-892. PubMed ID: 33782612
[TBL] [Abstract][Full Text] [Related]
4. PERHAPS: Paired-End short Reads-based HAPlotyping from next-generation Sequencing data.
Huang J; Pallotti S; Zhou Q; Kleber M; Xin X; King DA; Napolioni V
Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33285565
[TBL] [Abstract][Full Text] [Related]
5. Whole-genome haplotyping by dilution, amplification, and sequencing.
Kaper F; Swamy S; Klotzle B; Munchel S; Cottrell J; Bibikova M; Chuang HY; Kruglyak S; Ronaghi M; Eberle MA; Fan JB
Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5552-7. PubMed ID: 23509297
[TBL] [Abstract][Full Text] [Related]
6. KSNP: a fast de Bruijn graph-based haplotyping tool approaching data-in time cost.
Zhou Q; Ji F; Lin D; Liu X; Zhu Z; Ruan J
Nat Commun; 2024 Apr; 15(1):3126. PubMed ID: 38605047
[TBL] [Abstract][Full Text] [Related]
7. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.
Ahn S; Vikalo H
BMC Bioinformatics; 2015 Jul; 16():223. PubMed ID: 26178880
[TBL] [Abstract][Full Text] [Related]
8. Variant callers for next-generation sequencing data: a comparison study.
Liu X; Han S; Wang Z; Gelernter J; Yang BZ
PLoS One; 2013; 8(9):e75619. PubMed ID: 24086590
[TBL] [Abstract][Full Text] [Related]
9. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
Zheng GX; Lau BT; Schnall-Levin M; Jarosz M; Bell JM; Hindson CM; Kyriazopoulou-Panagiotopoulou S; Masquelier DA; Merrill L; Terry JM; Mudivarti PA; Wyatt PW; Bharadwaj R; Makarewicz AJ; Li Y; Belgrader P; Price AD; Lowe AJ; Marks P; Vurens GM; Hardenbol P; Montesclaros L; Luo M; Greenfield L; Wong A; Birch DE; Short SW; Bjornson KP; Patel P; Hopmans ES; Wood C; Kaur S; Lockwood GK; Stafford D; Delaney JP; Wu I; Ordonez HS; Grimes SM; Greer S; Lee JY; Belhocine K; Giorda KM; Heaton WH; McDermott GP; Bent ZW; Meschi F; Kondov NO; Wilson R; Bernate JA; Gauby S; Kindwall A; Bermejo C; Fehr AN; Chan A; Saxonov S; Ness KD; Hindson BJ; Ji HP
Nat Biotechnol; 2016 Mar; 34(3):303-11. PubMed ID: 26829319
[TBL] [Abstract][Full Text] [Related]
10. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
[TBL] [Abstract][Full Text] [Related]
11. Sequencing of isolated sperm cells for direct haplotyping of a human genome.
Kirkness EF; Grindberg RV; Yee-Greenbaum J; Marshall CR; Scherer SW; Lasken RS; Venter JC
Genome Res; 2013 May; 23(5):826-32. PubMed ID: 23282328
[TBL] [Abstract][Full Text] [Related]
12. Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.
Nevado B; Ramos-Onsins SE; Perez-Enciso M
Mol Ecol; 2014 Apr; 23(7):1764-79. PubMed ID: 24795998
[TBL] [Abstract][Full Text] [Related]
13. Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study.
Hou L; Sun N; Mane S; Sayward F; Rajeevan N; Cheung KH; Cho K; Pyarajan S; Aslan M; Miller P; Harvey PD; Gaziano JM; Concato J; Zhao H
Genet Epidemiol; 2017 Feb; 41(2):152-162. PubMed ID: 28019059
[TBL] [Abstract][Full Text] [Related]
14. Genotype calling and haplotyping in parent-offspring trios.
Chen W; Li B; Zeng Z; Sanna S; Sidore C; Busonero F; Kang HM; Li Y; Abecasis GR
Genome Res; 2013 Jan; 23(1):142-51. PubMed ID: 23064751
[TBL] [Abstract][Full Text] [Related]
15. Multi-centre evaluation of a comprehensive preimplantation genetic test through haplotyping-by-sequencing.
Masset H; Zamani Esteki M; Dimitriadou E; Dreesen J; Debrock S; Derhaag J; Derks K; Destouni A; Drüsedau M; Meekels J; Melotte C; Peeraer K; Tšuiko O; van Uum C; Allemeersch J; Devogelaere B; François KO; Happe S; Lorson D; Richards RL; Theuns J; Brunner H; de Die-Smulders C; Voet T; Paulussen A; Coonen E; Vermeesch JR
Hum Reprod; 2019 Aug; 34(8):1608-1619. PubMed ID: 31348829
[TBL] [Abstract][Full Text] [Related]
16. Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data.
Torkamaneh D; Laroche J; Bastien M; Abed A; Belzile F
BMC Bioinformatics; 2017 Jan; 18(1):5. PubMed ID: 28049422
[TBL] [Abstract][Full Text] [Related]
17. A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing.
Zhang Y
Bioinformatics; 2013 Apr; 29(7):878-85. PubMed ID: 23407359
[TBL] [Abstract][Full Text] [Related]
18. Haplotyping by linked-read sequencing (HLRS) of the genetic disease carriers for preimplantation genetic testing without a proband or relatives.
Li Q; Mao Y; Li S; Du H; He W; He J; Kong L; Zhang J; Liang B; Liu J
BMC Med Genomics; 2020 Aug; 13(1):117. PubMed ID: 32819358
[TBL] [Abstract][Full Text] [Related]
19. Identification of PKD2 mutations in human preimplantation embryos in vitro using a combination of targeted next-generation sequencing and targeted haplotyping.
Chen SC; Xu XL; Zhang JY; Ding GL; Jin L; Liu B; Sun DM; Mei CL; Yang XN; Huang HF; Xu CM
Sci Rep; 2016 May; 6():25488. PubMed ID: 27150309
[TBL] [Abstract][Full Text] [Related]
20. VarGrouper: A Bioinformatic Tool for Local Haplotyping of Deletion-Insertion Variants from Next-Generation Sequencing Data after Variant Calling.
Schmidt RJ; Macleay A; Le LP
J Mol Diagn; 2019 May; 21(3):384-389. PubMed ID: 30794986
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]