291 related articles for article (PubMed ID: 35756053)
1. One Day in Denmark: Comparison of Phenotypic and Genotypic Antimicrobial Susceptibility Testing in Bacterial Isolates From Clinical Settings.
Rebelo AR; Bortolaia V; Leekitcharoenphon P; Hansen DS; Nielsen HL; Ellermann-Eriksen S; Kemp M; Røder BL; Frimodt-Møller N; Søndergaard TS; Coia JE; Østergaard C; Westh H; Aarestrup FM
Front Microbiol; 2022; 13():804627. PubMed ID: 35756053
[TBL] [Abstract][Full Text] [Related]
2. Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study.
Doyle RM; O'Sullivan DM; Aller SD; Bruchmann S; Clark T; Coello Pelegrin A; Cormican M; Diez Benavente E; Ellington MJ; McGrath E; Motro Y; Phuong Thuy Nguyen T; Phelan J; Shaw LP; Stabler RA; van Belkum A; van Dorp L; Woodford N; Moran-Gilad J; Huggett JF; Harris KA
Microb Genom; 2020 Feb; 6(2):. PubMed ID: 32048983
[TBL] [Abstract][Full Text] [Related]
3. WGS-Based Prediction and Analysis of Antimicrobial Resistance in
Rokney A; Valinsky L; Vranckx K; Feldman N; Agmon V; Moran-Gilad J; Weinberger M
Front Cell Infect Microbiol; 2020; 10():365. PubMed ID: 32903472
[TBL] [Abstract][Full Text] [Related]
4. Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in
Bharat A; Petkau A; Avery BP; Chen JC; Folster JP; Carson CA; Kearney A; Nadon C; Mabon P; Thiessen J; Alexander DC; Allen V; El Bailey S; Bekal S; German GJ; Haldane D; Hoang L; Chui L; Minion J; Zahariadis G; Domselaar GV; Reid-Smith RJ; Mulvey MR
Microorganisms; 2022 Jan; 10(2):. PubMed ID: 35208747
[TBL] [Abstract][Full Text] [Related]
5. Automated antimicrobial susceptibility testing and antimicrobial resistance genotyping using Illumina and Oxford Nanopore Technologies sequencing data among
Conzemius R; Bergman Y; Májek P; Beisken S; Lewis S; Jacobs EB; Tamma PD; Simner PJ
Front Microbiol; 2022; 13():973605. PubMed ID: 36003946
[TBL] [Abstract][Full Text] [Related]
6. ResFinder 4.0 for predictions of phenotypes from genotypes.
Bortolaia V; Kaas RS; Ruppe E; Roberts MC; Schwarz S; Cattoir V; Philippon A; Allesoe RL; Rebelo AR; Florensa AF; Fagelhauer L; Chakraborty T; Neumann B; Werner G; Bender JK; Stingl K; Nguyen M; Coppens J; Xavier BB; Malhotra-Kumar S; Westh H; Pinholt M; Anjum MF; Duggett NA; Kempf I; Nykäsenoja S; Olkkola S; Wieczorek K; Amaro A; Clemente L; Mossong J; Losch S; Ragimbeau C; Lund O; Aarestrup FM
J Antimicrob Chemother; 2020 Dec; 75(12):3491-3500. PubMed ID: 32780112
[TBL] [Abstract][Full Text] [Related]
7. Prediction of Antimicrobial Resistance in Clinical Enterococcus faecium Isolates Using a Rules-Based Analysis of Whole-Genome Sequences.
Anahtar MN; Bramante JT; Xu J; Desrosiers LA; Paer JM; Rosenberg ES; Pierce VM; Kwon DS
Antimicrob Agents Chemother; 2022 Jan; 66(1):e0119621. PubMed ID: 34694881
[TBL] [Abstract][Full Text] [Related]
8. Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Shigella sonnei isolated from cases of diarrhoeal disease in England and Wales, 2015.
Sadouki Z; Day MR; Doumith M; Chattaway MA; Dallman TJ; Hopkins KL; Elson R; Woodford N; Godbole G; Jenkins C
J Antimicrob Chemother; 2017 Sep; 72(9):2496-2502. PubMed ID: 28591819
[TBL] [Abstract][Full Text] [Related]
9. Whole-Genome Sequencing Accurately Identifies Resistance to Extended-Spectrum β-Lactams for Major Gram-Negative Bacterial Pathogens.
Shelburne SA; Kim J; Munita JM; Sahasrabhojane P; Shields RK; Press EG; Li X; Arias CA; Cantarel B; Jiang Y; Kim MS; Aitken SL; Greenberg DE
Clin Infect Dis; 2017 Sep; 65(5):738-745. PubMed ID: 28472260
[TBL] [Abstract][Full Text] [Related]
10. Phenotypic and WGS-derived antimicrobial resistance profiles of clinical and non-clinical Acinetobacter baumannii isolates from Germany and Vietnam.
Wareth G; Linde J; Hammer P; Nguyen NH; Nguyen TNM; Splettstoesser WD; Makarewicz O; Neubauer H; Sprague LD; Pletz MW
Int J Antimicrob Agents; 2020 Oct; 56(4):106127. PubMed ID: 32750418
[TBL] [Abstract][Full Text] [Related]
11. Establishment of sentinel surveillance of human clinical campylobacteriosis in Ireland.
Brehony C; Lanigan D; Carroll A; McNamara E
Zoonoses Public Health; 2021 Mar; 68(2):121-130. PubMed ID: 33428331
[TBL] [Abstract][Full Text] [Related]
12. Prevalence of Cefotaxime-Resistant Escherichia coli Isolates from Healthy Cattle and Sheep in Northern Spain: Phenotypic and Genome-Based Characterization of Antimicrobial Susceptibility.
Tello M; Ocejo M; Oporto B; Hurtado A
Appl Environ Microbiol; 2020 Jul; 86(15):. PubMed ID: 32471914
[TBL] [Abstract][Full Text] [Related]
13. Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Campylobacter jejuni and Campylobacter coli isolated from cases of diarrhoeal disease in England and Wales, 2015-16.
Painset A; Day M; Doumith M; Rigby J; Jenkins C; Grant K; Dallman TJ; Godbole G; Swift C
J Antimicrob Chemother; 2020 Apr; 75(4):883-889. PubMed ID: 31943013
[TBL] [Abstract][Full Text] [Related]
14. Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Salmonella enterica serovars Typhi and Paratyphi.
Day MR; Doumith M; Do Nascimento V; Nair S; Ashton PM; Jenkins C; Dallman TJ; Stevens FJ; Freedman J; Hopkins KL; Woodford N; De Pinna EM; Godbole G
J Antimicrob Chemother; 2018 Feb; 73(2):365-372. PubMed ID: 29216342
[TBL] [Abstract][Full Text] [Related]
15. Use of online tools for antimicrobial resistance prediction by whole-genome sequencing in methicillin-resistant Staphylococcus aureus (MRSA) and vancomycin-resistant enterococci (VRE).
Babiker A; Mustapha MM; Pacey MP; Shutt KA; Ezeonwuka CD; Ohm SL; Cooper VS; Marsh JW; Doi Y; Harrison LH
J Glob Antimicrob Resist; 2019 Dec; 19():136-143. PubMed ID: 31005733
[TBL] [Abstract][Full Text] [Related]
16. Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates.
Tamma PD; Fan Y; Bergman Y; Pertea G; Kazmi AQ; Lewis S; Carroll KC; Schatz MC; Timp W; Simner PJ
Antimicrob Agents Chemother; 2019 Jan; 63(1):. PubMed ID: 30373801
[TBL] [Abstract][Full Text] [Related]
17. Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal
Neuert S; Nair S; Day MR; Doumith M; Ashton PM; Mellor KC; Jenkins C; Hopkins KL; Woodford N; de Pinna E; Godbole G; Dallman TJ
Front Microbiol; 2018; 9():592. PubMed ID: 29636749
[TBL] [Abstract][Full Text] [Related]
18. External validation of WGS-based antimicrobial susceptibility prediction tools, KOVER-AMR and ResFinder 4.1, for Escherichia coli clinical isolates.
Verschuuren T; Bosch T; Mascaro V; Willems R; Kluytmans J
Clin Microbiol Infect; 2022 Nov; 28(11):1465-1470. PubMed ID: 35662642
[TBL] [Abstract][Full Text] [Related]
19. Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing.
Zankari E; Hasman H; Kaas RS; Seyfarth AM; Agersø Y; Lund O; Larsen MV; Aarestrup FM
J Antimicrob Chemother; 2013 Apr; 68(4):771-7. PubMed ID: 23233485
[TBL] [Abstract][Full Text] [Related]
20. Systematic Evaluation of Whole Genome Sequence-Based Predictions of
Cooper AL; Low AJ; Koziol AG; Thomas MC; Leclair D; Tamber S; Wong A; Blais BW; Carrillo CD
Front Microbiol; 2020; 11():549. PubMed ID: 32318038
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]