These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 35758608)

  • 1. TIMSCONVERT: a workflow to convert trapped ion mobility data to open data formats.
    Luu GT; Freitas MA; Lizama-Chamu I; McCaughey CS; Sanchez LM; Wang M
    Bioinformatics; 2022 Aug; 38(16):4046-4047. PubMed ID: 35758608
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion.
    Hulstaert N; Shofstahl J; Sachsenberg T; Walzer M; Barsnes H; Martens L; Perez-Riverol Y
    J Proteome Res; 2020 Jan; 19(1):537-542. PubMed ID: 31755270
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QuantPipe: A User-Friendly Pipeline Software Tool for DIA Data Analysis Based on the OpenSWATH-PyProphet-TRIC Workflow.
    Wang D; Gan G; Chen X; Zhong CQ
    J Proteome Res; 2021 Jan; 20(1):1096-1102. PubMed ID: 33091296
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.
    Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R
    Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.
    Ma J; Casey CP; Zheng X; Ibrahim YM; Wilkins CS; Renslow RS; Thomas DG; Payne SH; Monroe ME; Smith RD; Teeguarden JG; Baker ES; Metz TO
    Bioinformatics; 2017 Sep; 33(17):2715-2722. PubMed ID: 28505286
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The CroCo cross-link converter: a user-centred tool to convert results from cross-linking mass spectrometry experiments.
    Bender J; Schmidt C
    Bioinformatics; 2020 Feb; 36(4):1296-1297. PubMed ID: 31562766
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Automated workflow composition in mass spectrometry-based proteomics.
    Palmblad M; Lamprecht AL; Ison J; Schwämmle V
    Bioinformatics; 2019 Feb; 35(4):656-664. PubMed ID: 30060113
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
    Formenti G; Abueg L; Brajuka A; Brajuka N; Gallardo-Alba C; Giani A; Fedrigo O; Jarvis ED
    Bioinformatics; 2022 Sep; 38(17):4214-4216. PubMed ID: 35799367
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Container-based bioinformatics with Pachyderm.
    Novella JA; Emami Khoonsari P; Herman S; Whitenack D; Capuccini M; Burman J; Kultima K; Spjuth O
    Bioinformatics; 2019 Mar; 35(5):839-846. PubMed ID: 30101309
    [TBL] [Abstract][Full Text] [Related]  

  • 10. StandEnA: a customizable workflow for standardized annotation and generating a presence-absence matrix of proteins.
    Chafra F; Borim Correa F; Oni F; Konu Karakayalı Ö; Stadler PF; Nunes da Rocha U
    Bioinform Adv; 2023; 3(1):vbad069. PubMed ID: 37448812
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry.
    Röst HL; Schmitt U; Aebersold R; Malmström L
    PLoS One; 2015; 10(4):e0125108. PubMed ID: 25927999
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient visualization of high-throughput targeted proteomics experiments: TAPIR.
    Röst HL; Rosenberger G; Aebersold R; Malmström L
    Bioinformatics; 2015 Jul; 31(14):2415-7. PubMed ID: 25788625
    [TBL] [Abstract][Full Text] [Related]  

  • 13. OpenTIMS, TimsPy, and TimsR: Open and Easy Access to timsTOF Raw Data.
    Łącki MK; Startek MP; Brehmer S; Distler U; Tenzer S
    J Proteome Res; 2021 Apr; 20(4):2122-2129. PubMed ID: 33724840
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NFTest: automated testing of Nextflow pipelines.
    Patel Y; Zhu C; Yamaguchi TN; Bugh YZ; Tian M; Holmes A; Fitz-Gibbon ST; Boutros PC
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38341660
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Technical Note: mzML and imzML Libraries for Processing Mass Spectrometry Data with the High-Performance Programming Language Julia.
    Rosas-Román I; Guillén-Alonso H; Moreno-Pedraza A; Winkler R
    Anal Chem; 2024 Mar; 96(10):3999-4004. PubMed ID: 38427332
    [TBL] [Abstract][Full Text] [Related]  

  • 16. rMSIproc: an R package for mass spectrometry imaging data processing.
    Ràfols P; Heijs B; Del Castillo E; Yanes O; McDonnell LA; Brezmes J; Pérez-Taboada I; Vallejo M; García-Altares M; Correig X
    Bioinformatics; 2020 Jun; 36(11):3618-3619. PubMed ID: 32108859
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Error-Free Data Visualization and Processing through imzML and mzML Validation.
    Race AM; Römpp A
    Anal Chem; 2018 Nov; 90(22):13378-13384. PubMed ID: 30220203
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequence database versioning for command line and Galaxy bioinformatics servers.
    Dooley DM; Petkau AJ; Van Domselaar G; Hsiao WW
    Bioinformatics; 2016 Apr; 32(8):1275-7. PubMed ID: 26656932
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AlphaTims: Indexing Trapped Ion Mobility Spectrometry-TOF Data for Fast and Easy Accession and Visualization.
    Willems S; Voytik E; Skowronek P; Strauss MT; Mann M
    Mol Cell Proteomics; 2021; 20():100149. PubMed ID: 34543758
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ORT: a workflow linking genome-scale metabolic models with reactive transport codes.
    Rubinstein RL; Borton MA; Zhou H; Shaffer M; Hoyt DW; Stegen J; Henry CS; Wrighton KC; Versteeg R
    Bioinformatics; 2022 Jan; 38(3):778-784. PubMed ID: 34726691
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.